[petsc-dev] error with karlrupp/fix-cuda-streams
Mark Adams
mfadams at lbl.gov
Wed Sep 25 19:37:07 CDT 2019
Here is the log.
On Wed, Sep 25, 2019 at 8:34 PM Mark Adams <mfadams at lbl.gov> wrote:
>
>
> On Wed, Sep 25, 2019 at 6:23 PM Balay, Satish <balay at mcs.anl.gov> wrote:
>
>> > 18:16 (cb53a04...) ~/petsc-karl$
>>
>> So this is the commit I recommended you test against - and that's what
>> you have got now. Please go ahead and test.
>>
>>
> I sent the log for this. This is the output:
>
> 18:16 (cb53a04...) ~/petsc-karl$ ../arch-summit-opt64idx-pgi-cuda.py
> PETSC_DIR=$PWD
>
> ===============================================================================
> Configuring PETSc to compile on your system
>
>
> ===============================================================================
> ===============================================================================
>
> ***** WARNING: F77 (set to
> /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.4-6acz4xyqjlpoaonjiiqjme2aknrfnzoy/linux
> use ./configure F77=$F77 if you really want to use that value ******
>
>
> ===============================================================================
>
>
> ===============================================================================
>
> ***** WARNING: Using default optimization C flags -O
>
> You might consider manually setting
> optimal optimization flags for your system with
>
> COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for
> examples
>
> ===============================================================================
>
>
> ===============================================================================
>
> ***** WARNING: You have an older version of Gnu make,
> it will work,
> but may not support all the
> parallel testing options. You can install the
> latest
> Gnu make with your package manager, such as brew or macports, or use
>
> the --download-make option to get the latest Gnu make warning
> message *****
>
> ===============================================================================
>
> TESTING: configureMPIEXEC from
> config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174)
>
> *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> details):
>
> -------------------------------------------------------------------------------
> Unable to run jsrun -g 1 with option "-n 1"
> Error: It is only possible to use js commands within a job allocation
> unless CSM is running
> 09-25-2019 18:20:13:224 108023 main: Error initializing RM connection.
> Exiting.
>
> *******************************************************************************
>
> 18:20 1 (cb53a04...) ~/petsc-karl$
>
>
>> [note: the branch is rebased - so 'git pull' won't work -(as you can
>> see from the "(forced update)" message - and '<>' status from git
>> prompt on balay/fix-mpiexec-shell-escape). So perhaps its easier to
>> deal with in detached mode - which makes this obvious]
>>
>
> I got this <> and "fixed" it by deleting the branch and repulling it. I
> guess I needed to fetch also.
>
> Mark
>
>
>>
>> Satish
>>
>>
>> On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:
>>
>> > I will test this now but ....
>> >
>> > 17:52 balay/fix-mpiexec-shell-escape= ~/petsc-karl$ git fetch
>> > remote: Enumerating objects: 119, done.
>> > remote: Counting objects: 100% (119/119), done.
>> > remote: Compressing objects: 100% (91/91), done.
>> > remote: Total 119 (delta 49), reused 74 (delta 28)
>> > Receiving objects: 100% (119/119), 132.88 KiB | 0 bytes/s, done.
>> > Resolving deltas: 100% (49/49), completed with 1 local objects.
>> > >From https://gitlab.com/petsc/petsc
>> > + b5e99a5...cb53a04 balay/fix-mpiexec-shell-escape ->
>> > origin/balay/fix-mpiexec-shell-escape (forced update)
>> > + ffdc635...7eeb5f9 jczhang/feature-sf-on-gpu ->
>> > origin/jczhang/feature-sf-on-gpu (forced update)
>> > cb9de97..f9ff08a jolivet/fix-error-col-row ->
>> > origin/jolivet/fix-error-col-row
>> > 40ea605..de5ad60 oanam/jacobf/cell-to-ref-mapping ->
>> > origin/oanam/jacobf/cell-to-ref-mapping
>> > + ecac953...9fb579e stefanozampini/hypre-cuda-rebased ->
>> > origin/stefanozampini/hypre-cuda-rebased (forced update)
>> > 18:16 balay/fix-mpiexec-shell-escape<> ~/petsc-karl$ git checkout
>> > origin/balay/fix-mpiexec-shell-escape
>> > Note: checking out 'origin/balay/fix-mpiexec-shell-escape'.
>> >
>> > You are in 'detached HEAD' state. You can look around, make experimental
>> > changes and commit them, and you can discard any commits you make in
>> this
>> > state without impacting any branches by performing another checkout.
>> >
>> > If you want to create a new branch to retain commits you create, you may
>> > do so (now or later) by using -b with the checkout command again.
>> Example:
>> >
>> > git checkout -b new_branch_name
>> >
>> > HEAD is now at cb53a04... mpiexec: fix shell escape of path-to-mpiexec
>> only
>> > when using autodected-path. Also spectrum MPI uses OMPI_MAJOR_VERSION
>> etc -
>> > so check if mpiexec supports --oversubscribe - before using it.
>> > 18:16 (cb53a04...) ~/petsc-karl$
>> >
>> > On Wed, Sep 25, 2019 at 5:58 PM Balay, Satish <balay at mcs.anl.gov>
>> wrote:
>> >
>> > > Defined "VERSION_GIT" to ""v3.11.3-2242-gb5e99a5""
>> > >
>> > > This is not the latest state - It should be:
>> > >
>> > > commit cb53a042369fb946804f53931a88b58e10588da1 (HEAD ->
>> > > balay/fix-mpiexec-shell-escape, origin/balay/fix-mpiexec-shell-escape)
>> > >
>> > > Try:
>> > >
>> > > git fetch
>> > > git checkout origin/balay/fix-mpiexec-shell-escape
>> > >
>> > > Satish
>> > >
>> > > On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:
>> > >
>> > > > On Wed, Sep 25, 2019 at 4:57 PM Balay, Satish <balay at mcs.anl.gov>
>> wrote:
>> > > >
>> > > > > On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:
>> > > > >
>> > > > > > I did test this and sent the log (error).
>> > > > >
>> > > > > Mark,
>> > > > >
>> > > > > I made more changes - can you retry again - and resend log.
>> > > > >
>> > > > > Satish
>> > > > >
>> > > >
>> > >
>> > >
>> >
>>
>>
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