[petsc-dev] Problems about PETSc installation on MS/Windows with the additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK
Smith, Barry F.
bsmith at mcs.anl.gov
Tue Jul 2 01:33:46 CDT 2019
It appears MUMPS uses an unprotected stdint.h file that the compilers cannot resolve. There is a big discussion of it as https://software.intel.com/en-us/forums/intel-c-compiler/topic/733929 PETSc also cannot locate this file and so works around not having it.
The strange thing is that it seems to exist at C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2019.1.144\windows\compiler\include\stdint.h
I would try a test where I copied this file to petsc/include and rerun the ./configure. With any luck it will make more progress.
Please send the resulting configure.log
Barry
> On Jul 2, 2019, at 1:08 AM, rongbao at ipp.ac.cn wrote:
>
> Dear Barry,
> Thank you very much for all your help. I have copied the metis.h file to the directory "/cygdrive/c/metis-5.1.0/include".
> and then run ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' --useThreads=0 --download-scalapack --with-parmetis-include="/cygdrive/c/parmetis-4.0.3/include" --with-parmetis-lib="/cygdrive/c/parmetis-4.0.3/libparmetis/Release/parmetis.lib /cygdrive/c/parmetis-4.0.3/libmetis/Release/metis.lib" --with-metis-include="/cygdrive/c/metis-5.1.0/include" --with-metis-lib="/cygdrive/c/metis-5.1.0/libmetis/Release/metis.lib"
> The problem changes as follows
>
> ===============================================================================
> Configuring PETSc to compile on your system
> ===============================================================================
> =============================================================================== ***** WARNING: Using default optimization C flags -O2 -QxW You might consider manually setting optimal optimization flags for your system with COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default C++ optimization flags -O2 -QxW -Zm200 You might consider manually setting optimal optimization flags for your system with CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: Using default FORTRAN optimization flags -O3 -QxW You might consider manually setting optimal optimization flags for your system with FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== Compiling Mumps; this may take several minutes =============================================================================== *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> -------------------------------------------------------------------------------
> Error running make on MUMPS: Could not execute "['make alllib']":
> make ARITH=c mumps_lib
> make[1]: Entering directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps'
> if [ "./PORD/lib/" != "" ] ; then \
> cd ./PORD/lib/; \
> make CC="/cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl" CFLAGS="-MT -wd4996 -O2 -QxW" AR="/cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe lib -a " RANLIB="/usr/bin/true" OUTC="-o " LIBEXT=.lib; \
> fi;
> make[2]: Entering directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/PORD/lib'
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c graph.c -o graph.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> graph.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c gbipart.c -o gbipart.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> gbipart.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c gbisect.c -o gbisect.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> gbisect.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c ddcreate.c -o ddcreate.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> ddcreate.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c ddbisect.c -o ddbisect.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> ddbisect.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c nestdiss.c -o nestdiss.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> nestdiss.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c multisector.c -o multisector.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> multisector.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c gelim.c -o gelim.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> gelim.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c bucket.c -o bucket.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> bucket.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c tree.c -o tree.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> tree.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c symbfac.c -o symbfac.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> symbfac.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c interface.c -o interface.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> interface.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c sort.c -o sort.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> sort.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 -O2 -QxW -c minpriority.c -o minpriority.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> minpriority.c
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe lib -a libpord.lib graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o multisector.o gelim.o bucket.o tree.o symbfac.o interface.o sort.o minpriority.o
> /usr/bin/true libpord.lib
> make[2]: Leaving directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/PORD/lib'
> if [ "./PORD/lib/" != "" ] ; then \
> cp ./PORD/lib//libpord.lib lib/libpord.lib; \
> fi;
> (cd src ; make c)
> make[2]: Entering directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src'
> make ARITH=c mumps_lib
> make[3]: Entering directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src'
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c lr_common.F -o lr_common.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c double_linked_list.F -o double_linked_list.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c ana_omp_m.F -o ana_omp_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c ana_orderings_wrappers_m.F -o ana_orderings_wrappers_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_memory_mod.F -o mumps_memory_mod.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_static_mapping.F -o mumps_static_mapping.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_sol_es.F -o mumps_sol_es.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_future_niv2_mod.F -o fac_future_niv2_mod.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_comm_ibcast.F -o mumps_comm_ibcast.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_ooc_common.F -o mumps_ooc_common.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c omp_tps_common_m.F -o omp_tps_common_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_asm_build_sort_index_m.F -o fac_asm_build_sort_index_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_asm_build_sort_index_ELT_m.F -o fac_asm_build_sort_index_ELT_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_l0_omp_m.F -o mumps_l0_omp_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c front_data_mgt_m.F -o front_data_mgt_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_maprow_data_m.F -o fac_maprow_data_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_descband_data_m.F -o fac_descband_data_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c fac_ibct_data_m.F -o fac_ibct_data_m.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c ana_orderings.F -o ana_orderings.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c ana_AMDMF.F -o ana_AMDMF.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c bcast_errors.F -o bcast_errors.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c estim_flops.F -o estim_flops.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_type_size.F -o mumps_type_size.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_type2_blocking.F -o mumps_type2_blocking.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_version.F -o mumps_version.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c tools_common.F -o tools_common.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. -I../include -c mumps_print_defined.F -o mumps_print_defined.o
> /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -MT -wd4996 -O2 -QxW -I/cygdrive/c/Program\ Files/MPICH2/include -I../include -DUPPPER -I/cygdrive/c/parmetis-4.0.3/include -I/cygdrive/c/metis-5.1.0/include -I../PORD/include/ -Dpord -Dmetis -Dparmetis -c mumps_common.c -o mumps_common.o
> cl: 命令行 warning D9002 :忽略未知选项“-QxW”
> mumps_common.c
> C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2019.1.144\windows\compiler\include\stdint.h(39): fatal error C1083: 无法打开包括文件: “../../vc/include/stdint.h”: No such file or directory
> make[3]: Leaving directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src'
> make[2]: Leaving directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src'
> make[1]: Leaving directory '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps'make[3]: *** [Makefile:295: mumps_common.o] Error 2
> make[2]: *** [Makefile:20: c] Error 2
> make[1]: *** [Makefile:40: mumps_lib] Error 2
> make: *** [Makefile:18: c] Error 2
>
>
> Thank you very much for all you help.
> Best regards,
> Bao Rong
>
> rongbao at ipp.ac.cn
>
> From: Smith, Barry F.
> Date: 2019-07-02 12:47
> To: rongbao at ipp.ac.cn
> CC: petsc-maint
> Subject: Re: [petsc-maint] Problems about PETSc installation on MS/Windows with the additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK
>
> Please send
>
> ls /cygdrive/c/metis-5.1.0/include
>
> it is unable to find the metis.h file in that directory.
>
> Barry
>
>
> > On Jul 1, 2019, at 11:39 PM, rongbao--- via petsc-maint <petsc-maint at mcs.anl.gov> wrote:
> >
> > Dear Satish,
> > Thank you very much for all your help. I installed metis/parmetis with '/MT'.
> > May be this petsc configure.log?
> > Thank you very much for all you help.
> > Best regards,
> > Bao Rong
> >
> > 发件人： Balay, Satish
> > 发送时间： 2019-07-02 12:00
> > 收件人： Smith, Barry F.
> > 抄送： rongbao at ipp.ac.cn; petsc-maint
> > 主题： Re: [petsc-maint] Problems about PETSc installation on MS/Windows with the additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK
> > Make sure you've installed metis/parmetis with '/MT' or equivalent compiler option
> >
> > Also its best if you can copy/paste the text from the terminal
> > [instead of screenshots of the terminal] - and also send configure.log
> > [or relevant log] as Barry indicated.
> >
> > Satish
> >
> > On Tue, 2 Jul 2019, Smith, Barry F. via petsc-maint wrote:
> >
> > >
> > > Send configure.log
> > >
> > >
> > > > On Jul 1, 2019, at 8:59 PM, rongbao at ipp.ac.cn wrote:
> > > >
> > > > Dear PETSc Team, Barry and Satish,
> > > > Thank you very much for all your help. I have tried your valuable advices. According to your valuable advices, I open” Intel 64 Visual Studio 2017 environment”, and run cygwin terminal/bash-shell mintty.exe as: c:\cygwin\bin\mintty.exe. Then I run “cd /cygdrive/c/petsc”, and then run “./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack”. It shows no problem as following picture, and thank you very much for all your help.
> > > > <InsertPic_.jpg>
> > > >
> > > > I also have another question. In fact, I want to complete PETSc installation with the following additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK. The recommended configuration command I obtained for PETSc is as following
> > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' --useThreads=0 --download-scalapack --with-parmetis-include=/home/user/parmetis-4.0.3/include --with-parmetis-lib="/home/user/libs/parmetis.lib /home/user/libs/metis.lib" --with-metis-include="/home/user/metis-5.1.0/include" --with-metis-lib=/home/user/libs/metis.lib
> > > > In order to complete this PETSc installation, firstly I installed METIS and ParMETIS with VS2017 and CMake using a standard procedure. The building directories are “C:\metis-5.1.0” and “C:\parmetis-4.0.3”.
> > > > <InsertPic_6118.jpg>
> > > > <InsertPic_C6CE.jpg>
> > > > Then according to the above recommended configuration command, I made the following modification.
> > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' --useThreads=0 --download-scalapack --with-parmetis-include="/cygdrive/c/parmetis-4.0.3/include" --with-parmetis-lib="/cygdrive/c/parmetis-4.0.3/libparmetis/Release/parmetis.lib /cygdrive/c/parmetis-4.0.3/libmetis/Release/metis.lib" --with-metis-include="/cygdrive/c/metis-5.1.0/include" --with-metis-lib="/cygdrive/c/metis-5.1.0/libmetis/Release/metis.lib"
> > > > Finally, I run this modified configuration command, and there are some problems as
> > > > <InsertPic_277A.jpg>
> > > >
> > > > I don’t not my installation steps and understanding is right or not? Would you kindly please tell me the correct installation steps or suggestions?
> > > > Thank you very much for all you help.
> > > > Best regards,
> > > > Bao Rong
> > > > ****************************************************
> > > > Bao Rong, Ph.D.
> > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences
> > > > ADD: Institute of Plasma Physics, 350 Shushanhu Road，Hefei，Anhui，230031
> > > > Email: rongbao at ipp.ac.cn; rongbao_nust at sina.com
> > > > *****************************************************
> > > >
> > > >
> > > > 发件人： Balay, Satish
> > > > 发送时间： 2019-07-01 01:19
> > > > 收件人： rongbao at ipp.ac.cn
> > > > 抄送： petsc-maint; Smith, Barry F.
> > > > 主题： Re: Re: [petsc-maint] Problems about PETSc installation on MS/Windows
> > > > Try:
> > > > 1. reboot the machine
> > > > [do not start any cygwin stuff - like mintty or bash or anything]
> > > > 2. re-run cygwin setup.exe to completion.
> > > > 3. redo the petsc build [via the procedure below]
> > > >
> > > > Satish
> > > >
> > > > On Mon, 1 Jul 2019, rongbao at ipp.ac.cn wrote:
> > > >
> > > > > Dear Barry and Satish,
> > > > > Thank you very much for all your help. I have tried all advices. Only the following steps seem to be hopeful, although there are still problems.
> > > > > (1) Start -> Programs -> Intel Parallel Studio XE 2019 -> Command Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 Visual Studio 2017 environment. run cygwin terminal/bash-shell mintty.exe by using “c:\cygwin\bin\mintty.exe”.
> > > > > I can obtain the following cygwin terminal/bash-shell
> > > > > (2) run “/usr/bin/bash --login” in the cygwin terminal/bash-shell as
> > > > > Then run “cd /cygdrive/c/petsc” and “./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack”. There are some problems as
> > > > >
> > > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> > > > > -------------------------------------------------------------------------------
> > > > > Error running make on /cygdrive/c/petsc/arch-mswin-c-debug/externalpackages/fblaslapack-3.4.2: Could not execute "['cd /cygdrive/c/petsc/arch-mswin-c-debug/externalpackages/fblaslapack-3.4.2 && make -f tmpmakefile cleanblaslapck cleanlib && make -f tmpmakefile']":
> > > > > /usr/bin/rm -f */*.o
> > > > > /usr/bin/rm -f ./*.a ./*.lib 0 [main] make 9498 child_info_fork::abort: \??\C:\cygwin\bin\cygiconv-2.dll: Loaded to different address: parent(0x600000) != child(0x440000)
> > > > > make: fork: Resource temporarily unavailable
> > > > > 0 [main] make 9499 child_info_fork::abort: \??\C:\cygwin\bin\cygiconv-2.dll: Loaded to different address: parent(0x600000) != child(0x7A0000)
> > > > > make: fork: Resource temporarily unavailable
> > > > > (3) I also run “/usr/bin/ls /usr/bin”, and obtain some informations, shown as in the appendix.
> > > > >
> > > > > I don't know how to solve these problems. Would you kindly please tell me the mistakes?
> > > > > Thank you very much for all you help.
> > > > > Best regards,
> > > > > Bao Rong
> > > > > ****************************************************
> > > > > Bao Rong, Ph.D.
> > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences
> > > > > ADD: Institute of Plasma Physics, 350 Shushanhu Road，Hefei，Anhui，230031
> > > > > Email: rongbao at ipp.ac.cn; rongbao_nust at sina.com
> > > > > *****************************************************
> > > > >
> > > > > From: Balay, Satish
> > > > > Date: 2019-06-30 14:02
> > > > > To: Smith, Barry F.
> > > > > CC: rongbao at ipp.ac.cn; petsc-maint
> > > > > Subject: Re: [petsc-maint] Problems about PETSc installation on MS/Windows
> > > > > After starting mintty.exe - try:
> > > > >
> > > > > /usr/bin/bash --login
> > > > > [and then ./configure ...]
> > > > >
> > > > > Also - what do you have for:
> > > > >
> > > > > /usr/bin/ls /usr/bin
> > > > >
> > > > > Satish
> > > > >
> > > > > On Sun, 30 Jun 2019, Smith, Barry F. via petsc-maint wrote:
> > > > >
> > > > > >
> > > > > > A quick inspection seems to indicate you are doing things correctly.
> > > > > >
> > > > > > The message form ifort is fine. It just indicates no files were passed to it to compile.
> > > > > >
> > > > > > Regarding the issue with not finding python. In your original shell you confirmed that python ran. But once you did
> > > > > >
> > > > > > Start -> Programs -> Intel Parallel Studio XE 2019 -> Command Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 Visual Studio 2017 environment.
> > > > > > run cygwin terminal/bash-shell mintty.exe
> > > > > >
> > > > > > you did not check again that python worked. Please run python from this shell and confirm if it works. My guess is that it does not work. Which would explain why it was unable to run the ./configure If python is not found you can try to run with the full path of python.
> > > > > >
> > > > > > c:\cygwin\bin\python
> > > > > >
> > > > > > or maybe
> > > > > >
> > > > > > c:\cygwin\bin\python.exe
> > > > > >
> > > > > > or maybe
> > > > > >
> > > > > > /cydrive/c/Python27/python.exe
> > > > > >
> > > > > > or maybe something else, does either of those work? If you can run ./configure using the full python path, for example,
> > > > > >
> > > > > > c:\cygwin\bin\python ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack
> > > > > >
> > > > > > does that work?
> > > > > >
> > > > > >
> > > > > >
> > > > > > Barry
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > > On Jun 29, 2019, at 8:43 PM, rongbao at ipp.ac.cn wrote:
> > > > > > >
> > > > > > > Dear Barry,
> > > > > > > Thank you very much for all you help. I have changed the PETSC_DIR as “c/petsc”.
> > > > > > > I have done the following two methods, but all of them have problems.
> > > > > > > (1) The first method
> > > > > > > I open Cygwin Terminal directly, and run “python”. It shows “Python 2.7.16 (default, Mar 20 2019, 12:29:04) [GCC 7.4.0] on Cygwin Type "help", "copyright", "credits" or "license" for more information.”
> > > > > > > Then I run “python ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack” or “python cygdrive/c/petsc/configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack”. There are all “SyntaxError: invalid syntax”.
> > > > > > > <InsertPic_.jpg>
> > > > > > > (2) The second method
> > > > > > > I open” Intel 64 Visual Studio 2017 environment”, and run cygwin terminal/bash-shell mintty.exe as: c:\cygwin\bin\mintty.exe. Then run “python”, it shows “bash: python: command not found”.
> > > > > > > <InsertPic_.png>
> > > > > > > I also run “cl” and “ifort”. There is an error “ifort: command line error: no files specified; for help type "ifort /help”.
> > > > > > > <InsertPic_3D20.png>
> > > > > > > I run “cd /cygdrive/c/petsc”, and then run “python ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack
> > > > > > > ”. It shows “bash: python: command not found”.
> > > > > > > <InsertPic_881C.jpg>
> > > > > > > I don't know how to solve these problems. Would you kindly please tell me the mistakes?
> > > > > > > Thank you very much for all you help.
> > > > > > > Best regards,
> > > > > > > Bao Rong
> > > > > > > ****************************************************
> > > > > > > Bao Rong, Ph.D.
> > > > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences
> > > > > > > ADD: Institute of Plasma Physics, 350 Shushanhu Road，Hefei，Anhui，230031
> > > > > > > Email: rongbao at ipp.ac.cn; rongbao_nust at sina.com
> > > > > > > *****************************************************
> > > > > > >
> > > > > > > From: Smith, Barry F.
> > > > > > > Date: 2019-06-29 23:07
> > > > > > > To: rongbao at ipp.ac.cn
> > > > > > > CC: petsc-maint
> > > > > > > Subject: Re: [petsc-maint] Problems about PETSc installation on MS/Windows
> > > > > > >
> > > > > > > Two things to do
> > > > > > >
> > > > > > > 1) don't have a space and "" in your PETSC_DIR so change the directory name to have no spaces.
> > > > > > >
> > > > > > > 2) Run
> > > > > > >
> > > > > > > python ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack
> > > > > > >
> > > > > > > Good luck,
> > > > > > >
> > > > > > > Barry
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > > On Jun 29, 2019, at 9:06 AM, rongbao--- via petsc-maint <petsc-maint at mcs.anl.gov> wrote:
> > > > > > > >
> > > > > > > > Dear PETSc Team,
> > > > > > > > I am a beginner of PETSc, and want to use PETSc on MS/Windows. I use win7, Visual Studio 2017, Intel Parallel Studio XE 2019, and petsc-3.11.2. According to Installation Guide (https://www.mcs.anl.gov/petsc/documentation/installation.html#windows), my Installation steps are as following.
> > > > > > > > (1) I download and install Cygwin (x86) from http://www.cygwin.com
> > > > > > > > (2) Remove Cygwin link.exe: [from cygwin terminal/bash-shell]:
> > > > > > > > mv /usr/bin/link.exe /usr/bin/link-cygwin.exe
> > > > > > > > <InsertPic_.jpg>
> > > > > > > > (3) Setup cygwin terminal/bash-shell with Working Compilers:
> > > > > > > > (3.1) Start -> Programs -> Intel Parallel Studio XE 2019 -> Command Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 Visual Studio 2017 environment.
> > > > > > > > run cygwin terminal/bash-shell mintty.exe as: c:\cygwin\bin\mintty.exe
> > > > > > > > <InsertPic_98D6.jpg>
> > > > > > > > (3.2) verify if the compilers are useable [by running cl, ifort in this cygwin terminal/bash-shell]
> > > > > > > > <InsertPic_7165.jpg>
> > > > > > > > There is an error as “ifort: command line error: no files specified”.
> > > > > > > > (4) run configure with win32fe and then build the libraries with make [as per the usual instructions]
> > > > > > > > cd /cygdrive/g/"CAE soft"/source/petsc-3.11.2
> > > > > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --download-fblaslapack
> > > > > > > > <InsertPic_890E.jpg>
> > > > > > > > There is an error as “/usr/bin/env: 'python': No such file or directory”. But When I installed cygwin, I chose to install Python as
> > > > > > > > <InsertPic_.png>
> > > > > > > > Did I make any mistakes? I don't know how to solve these problems. Would you kindly please tell me where the mistake is, and help me complete the installation?
> > > > > > > > Thank you very much for all you help.
> > > > > > > > Best regards,
> > > > > > > > Bao Rong
> > > > > > > > ****************************************************
> > > > > > > > Bao Rong, Ph.D.
> > > > > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences
> > > > > > > > ADD: Institute of Plasma Physics, 350 Shushanhu Road，Hefei，Anhui，230031
> > > > > > > > Email: rongbao at ipp.ac.cn; rongbao_nust at sina.com
> > > > > > > > *****************************************************
> > > > > > > > <Thank you very nuch for your help.pdf>
> > > > > > >
> > > > > > > <Thank you very much for all your help.doc>
> > > > > >
> > > > > >
> > > > >
> > > > <PETSc installation with the additional packages.doc>
> > >
> > >
> > <configure.log>
>
> <configure.log>
More information about the petsc-dev
mailing list