[petsc-dev] Plex - Metis warnings
Mark Adams
mfadams at lbl.gov
Mon Oct 29 16:25:40 CDT 2018
On Mon, Oct 29, 2018 at 5:19 PM Balay, Satish <balay at mcs.anl.gov> wrote:
> both 'long' and 'long long' should be 64bit.
>
> Did this work before - and change today? [i.e due to one of the PR merges?]
>
I am not sure, but probably not. I don't always check the makelogs and I am
just getting this machine/compiler working.
>
> Satish
>
> On Mon, 29 Oct 2018, Matthew Knepley via petsc-dev wrote:
>
> > On Mon, Oct 29, 2018 at 4:56 PM Mark Adams via petsc-dev <
> > petsc-dev at mcs.anl.gov> wrote:
> >
> > > I am building a fresh PETSc with GNU on Titan and I get these warnings
> > > about incompatible pointers in calls in PlexPartition to MarMetis.
> > >
> >
> > Looks like PETSc has 64-bit ints and ParMetis has 32-bit ints. Just have
> > PETSc build ParMetis.
> >
> > Thanks,
> >
> > Matt
> >
> >
> > > Mark
> > >
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:
> > > In function 'PetscPartitionerPartition_ParMetis':
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1461:40:
> > > warning: passing argument 1 of 'METIS_SetDefaultOptions' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_SetDefaultOptions(options); /* initialize all
> > > defaults */
> > > ^~~~~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:229:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_SetDefaultOptions(idx_t *options);
> > > ^~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:43:
> > > warning: passing argument 1 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > > ^
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:51:
> > > warning: passing argument 2 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > > ^
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:58:
> > > warning: passing argument 3 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > > ^~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:64:
> > > warning: passing argument 4 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > > ^~~~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:72:
> > > warning: passing argument 5 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:84:
> > > warning: passing argument 7 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^~~~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:92:
> > > warning: passing argument 8 of 'METIS_PartGraphRecursive' from
> incompatible
> > > pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:116:
> > > warning: passing argument 11 of 'METIS_PartGraphRecursive' from
> > > incompatible pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^~~~~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:125:
> > > warning: passing argument 12 of 'METIS_PartGraphRecursive' from
> > > incompatible pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon,
> idx_t
> > > *xadj,
> > > ^~~~~~~~~~~~~~~~~~~~~~~~
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:135:
> > > warning: passing argument 13 of 'METIS_PartGraphRecursive' from
> > > incompatible pointer type [-Wincompatible-pointer-types]
> > > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy,
> > > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut,
> assignment);
> > >
> > > ^~~~~~~~~~
> > > In file included from
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0,
> > > from
> > >
> /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395:
> > >
> /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16:
> > > note: expected 'idx_t * {aka long int *}' but argument is of type
> 'PetscInt
> > > * {aka long long int *}'
> > >
> > >
> > > ..........
> > >
> >
> >
> >
>
>
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