[petsc-dev] snes/ex56 regression
Mark Adams
mfadams at lbl.gov
Wed Jul 4 09:07:17 CDT 2018
yep:
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Object is in wrong state
[0]PETSC ERROR: Not for unassembled matrix
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.9.3-681-g56949d1303 GIT
Date: 2018-07-02 18:15:56 -0500
[0]PETSC ERROR:
/global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56
on a named nid02516 by madams Wed Jul 4 06:42:23 2018
[0]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2
--known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8
--known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8
--known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1
--known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0
--known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn
COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl
-static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1
--with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0
--download-parmetis=1
LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64
-lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
--with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include
--with-debugging=0 --with-mpiexec=srun --with-batch=1
--known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0
--with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp
--with-openmp=1 --download-p4est=0 --with-x=0
--prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp
PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
[0]PETSC ERROR: #1 MatConvert() line 4066 in
/global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: #2 MatSetType() line 67 in
/global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c
[0]PETSC ERROR: #3 MatSetFromOptions() line 229 in
/global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c
[0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in
/global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c
[0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in
/global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c
[0]PETSC ERROR: #6 main() line 428 in
/global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c
On Wed, Jul 4, 2018 at 9:57 AM Matthew Knepley <knepley at gmail.com> wrote:
> On Wed, Jul 4, 2018 at 8:47 AM Mark Adams <mfadams at lbl.gov> wrote:
>
>> Sorry, this error was with MKL matrices. It is still an error inside of
>> Plex. My non-Plex tests (KSP) now work in a branch (pushed).
>>
>
> Ah, I might know what this is. When you ask the DM to create a matrix, it
> tries to convert it to the internal type
> -dm_mat_type. Is this set to the type you want? Its possible we have some
> logic problem with when the conversion happens
> that does not get triggered in the regular scenarios.
>
> Matt
>
>
>> On Tue, Jul 3, 2018 at 7:24 PM Mark Adams <mfadams at lbl.gov> wrote:
>>
>>>
>>>
>>> On Tue, Jul 3, 2018 at 6:26 PM Jed Brown <jed at jedbrown.org> wrote:
>>>
>>>> "Smith, Barry F." <bsmith at mcs.anl.gov> writes:
>>>>
>>>> > Runs fine in the master branch; do you really need it to work in
>>>> maint.
>>>>
>>>> Uh, many users work with releases. If this is a "regression" it implies
>>>> that it worked at some point in the past. In that case, we should fix
>>>> it in 'maint' even if some new feature in 'master' has also fixed it.
>>>> Note that Mark's prompt says he's on 'master', not 'maint'.
>>>>
>>>
>>> Yea, let me double check this.
>>>
>>>
>>>>
>>>> > Barry
>>>> >
>>>> >
>>>> >> On Jul 3, 2018, at 6:39 AM, Mark Adams <mfadams at lbl.gov> wrote:
>>>> >>
>>>> >> SNES ex56 seems to have regressed:
>>>> >>
>>>> >> 04:35 nid02516 master *=
>>>> ~/petsc_install/petsc/src/snes/examples/tutorials$ make
>>>> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp
>>>> PETSC_ARCH="" runex56
>>>> >> srun -n 1 ./ex56 -cells 2,2,1 -max_conv_its 3 -petscspace_order 2
>>>> -snes_max_it 2 -ksp_max_it 100 -ksp_type cg -ksp_rtol 1.e-11 -ksp_norm_type
>>>> unpreconditioned -snes_rtol 1.e-10 -pc_type gamg -pc_gamg_type agg
>>>> -pc_gamg_agg_nsmooths 1 -pc_gamg_coarse_eq_limit 1000
>>>> -pc_gamg_reuse_interpolation true -pc_gamg_square_graph 1
>>>> -pc_gamg_threshold 0.05 -pc_gamg_threshold_scale .0 -ksp_converged_reason
>>>> -snes_monitor_short -ksp_monitor_short -snes_converged_reason
>>>> -use_mat_nearnullspace true -mg_levels_ksp_max_it 1 -mg_levels_ksp_type
>>>> chebyshev -mg_levels_esteig_ksp_type cg -mg_levels_esteig_ksp_max_it 10
>>>> -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05 -mg_levels_pc_type jacobi
>>>> -petscpartitioner_type simple -mat_block_size 3 -matptap_via scalable
>>>> -ex56_dm_view -run_type 1
>>>> >> OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used.
>>>>
>>>>
>>>> >> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>>
>>>> >> [0]PETSC ERROR: Object is in wrong state
>>>>
>>>>
>>>> >> [0]PETSC ERROR: Not for unassembled matrix
>>>>
>>>>
>>>> >> [0]PETSC ERROR: See
>>>> http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble
>>>> shooting.
>>>>
>>>> >> [0]PETSC ERROR: Petsc Development GIT revision:
>>>> v3.9.2-825-g3a11c7608d GIT Date: 2018-07-01 06:15:09 +0200
>>>>
>>>> >> [0]PETSC ERROR:
>>>> /global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56
>>>> on a named nid02516 by madams Tue Jul 3 04:35:52 2018
>>>>
>>>> >> [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768
>>>> --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
>>>> --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2
>>>> --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8
>>>> --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8
>>>> --known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4
>>>> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1
>>>> --known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0
>>>> --known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn
>>>> COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl
>>>> -static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1
>>>> --with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0
>>>> --download-parmetis=1
>>>> LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64
>>>> -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
>>>> --with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include
>>>> --with-debugging=1 --with-mpiexec=srun --with-batch=1
>>>> --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0
>>>> --with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp
>>>> --with-openmp=1 --download-p4est=0 --with-x=0
>>>> --prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp
>>>> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
>>>> >> [0]PETSC ERROR: #1 MatConvert() line 4066 in
>>>> /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c
>>>> >> [0]PETSC ERROR: #2 MatSetType() line 67 in
>>>> /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c
>>>> >> [0]PETSC ERROR: #3 MatSetFromOptions() line 229 in
>>>> /global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c
>>>> >> [0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in
>>>> /global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c
>>>> >> [0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in
>>>> /global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c
>>>> >> [0]PETSC ERROR: #6 main() line 428 in
>>>> /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c
>>>> >> [0]PETSC ERROR: PETSc Option Table entries:
>>>> >> [0]PETSC ERROR: -cells 2,2,1
>>>> >> [0]PETSC ERROR: -ex56_dm_refine 0
>>>> >> [0]PETSC ERROR: -ex56_dm_view
>>>> >> [0]PETSC ERROR: -ksp_converged_reason
>>>> >> [0]PETSC ERROR: -ksp_max_it 100
>>>> >> [0]PETSC ERROR: -ksp_monitor_short
>>>> >> [0]PETSC ERROR: -ksp_norm_type unpreconditioned
>>>> >> [0]PETSC ERROR: -ksp_rtol 1.e-11
>>>> >> [0]PETSC ERROR: -ksp_type cg
>>>> >> [0]PETSC ERROR: -mat_block_size 3
>>>> >> [0]PETSC ERROR: -mat_type aijmkl
>>>> >> [0]PETSC ERROR: -matptap_via scalable
>>>> >> [0]PETSC ERROR: -max_conv_its 3
>>>> >> [0]PETSC ERROR: -mg_levels_esteig_ksp_max_it 10
>>>> >> [0]PETSC ERROR: -mg_levels_esteig_ksp_type cg
>>>> >> [0]PETSC ERROR: -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05
>>>> >> [0]PETSC ERROR: -mg_levels_ksp_max_it 1
>>>> >> [0]PETSC ERROR: -mg_levels_ksp_type chebyshev
>>>> >> [0]PETSC ERROR: -mg_levels_pc_type jacobi
>>>> >> [0]PETSC ERROR: -pc_gamg_agg_nsmooths 1
>>>> >> [0]PETSC ERROR: -pc_gamg_coarse_eq_limit 1000
>>>> >> [0]PETSC ERROR: -pc_gamg_reuse_interpolation true
>>>> >> [0]PETSC ERROR: -pc_gamg_square_graph 1
>>>> >>
>>>>
>>>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/>
>
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