[petsc-dev] [petsc-users] Error during PETSc build on Edison

[Amneet Bhalla]

OK, I am now trying with INTEL compilers (as the GNU didn't seem to run the
snes example manually).
Now I am getting error with fortran and C++ linkage. See the configure.log



On Mon, Jan 29, 2018 at 9:13 PM, Smith, Barry F. <bsmith at mcs.anl.gov> wrote:

>
>
> > On Jan 29, 2018, at 11:11 PM, Amneet Bhalla <mail2amneet at gmail.com>
> wrote:
> >
> > I see. It compiled and linked on the frontend quickly. although with a
> warning
> > /global/homes/a/apbhalla/softwares/PETSc-BitBucket/
> PETSc/linux-opt/lib/libpetsc.a(send.o): In function `PetscOpenSocket':
> > send.c:(.text+0x346): warning: Using 'gethostbyname' in statically
> linked applications requires at runtime the shared libraries from the glibc
> version used for linking
> > /usr/bin/rm -f ex3.o
>
>   Sadly this message will still be there long after we are all dead,
> assuming Cray is still in business.
>
> >
> > Not sure how to get rid of this.
> >
> > However, the executable is stuck in the interactive session.  I wonder
> if something is up with the interactive session itself.
> > I am using the command salloc -N 1 -q debug -L SCRATCH
> > to create one, and running the example is
> >
> > apbhalla at nid00108:~/softwares/PETSc-BitBucket/PETSc/src/snes/examples/tutorials$
> srun -n 3 ./ex3
> >
> >
> > On Mon, Jan 29, 2018 at 9:01 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> > You should be able to compile/link on the frontend - and then run on the
> interactive node.
> >
> > Satish
> >
> > On Tue, 30 Jan 2018, Amneet Bhalla wrote:
> >
> > > It's way too long. The interactive session expired :-(. I think the
> default
> > > time is ~30 minutes.
> > > I will let it link in a new session and see if that works.
> > >
> > > On Mon, Jan 29, 2018 at 8:55 PM, Satish Balay <balay at mcs.anl.gov>
> wrote:
> > >
> > > > On Tue, 30 Jan 2018, Amneet Bhalla wrote:
> > > >
> > > > > The configure and build worked. When I do make test, it asks to run
> > > > > snes examples manually as nersc does not
> > > > > provide mpiexec command. I tried an interactive session and tried
> > > > building
> > > > > snes/examples/tutorials/ex3
> > > > >
> > > > > % make VERBOSE=1 ex3
> > > > >
> > > > > I am getting stuck at
> > > >
> > > > Perhaps its taking a long time to link - and you need to wait for it
> [to
> > > > complete]?
> > > >
> > > > Satish
> > > > >
> > > > > apbhalla at nid03377:
> > > > > ~/softwares/PETSc-BitBucket/PETSc/src/snes/examples/tutorials$
> make
> > > > > VERBOSE=1 ex3
> > > > >
> > > > > cc -O3  -o ex3 ex3.o
> > > > > -L/global/homes/a/apbhalla/softwares/PETSc-BitBucket/
> PETSc/linux-opt/lib
> > > > > -Wl,-rpath,/global/homes/a/apbhalla/softwares/PETSc-
> > > > BitBucket/PETSc/linux-opt/lib
> > > > > -lpetsc -lHYPRE -ldl -lstdc++
> > > > >
> > > > > I am not sure what's going on as there is no return after that.
> > > > >
> > > > > On Mon, Jan 29, 2018 at 8:27 PM, Satish Balay <balay at mcs.anl.gov>
> wrote:
> > > > >
> > > > > > On Tue, 30 Jan 2018, Smith, Barry F. wrote:
> > > > > >
> > > > > > >    Master now should not require this horrible flags. Could
> you do a
> > > > > > > test build with master on edison without these flags and see
> what
> > > > > > > happens?
> > > > > >
> > > > > > It does not work. Will move this thread (with logs) to
> petsc-maint.
> > > > > >
> > > > > > Satish
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
> > --
> > --Amneet
> >
> >
> >
>
>


-- 
--Amneet
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