[petsc-dev] configure failure

[Barry Smith]

> On Jul 13, 2017, at 1:28 PM, Tobin Isaac <tisaac at gatech.edu> wrote:
> 
> p4est is a pretty standard autotools project, I'll check if there's any better cross-compiling support than what we're using.

   The problem with most cross-compiling support in autotools is it assumes it "somehow" knows about all systems you are cross compiling for; which won't be true for new systems that didn't exist when the cross compiling support was implemented. This is why I don't have much respect for auto tools cross compiling support.


> 
> On July 13, 2017 2:18:51 PM EDT, Barry Smith <bsmith at mcs.anl.gov> wrote:
>> 
>> p4est configure should provide an option to not run compiled code and
>> instead have needed values passed in as configure arguments.
>> 
>>> On Jul 13, 2017, at 1:07 PM, Matthew Knepley <knepley at gmail.com>
>> wrote:
>>> 
>>> On Thu, Jul 13, 2017 at 12:32 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>> 
>>> Are you cross-compiling there?
>>> 
>>> configure:4469: checking whether we are cross compiling
>>> configure:4477: ftn -o conftest -g -O -fp-model fast -qopt-report=5
>> -qopenmp-simd  conftest.f
>> -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib
>> -L/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib -lflapack
>> -Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib
>> -L/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib -lfblas
>> -L/opt/cray/pe/mpt/7.4.4/gni/sma/lib64
>> -L/opt/cray/pe/libsci/16.09.1/INTEL/15.0/mic_knl/lib
>> -L/opt/cray/pe/hdf5-parallel/1.10.0/INTEL/15.0/lib
>> -L/opt/cray/dmapp/default/lib64
>> -L/opt/cray/pe/mpt/7.4.4/gni/mpich-intel/16.0/lib
>> -L/usr/common/software/darshan/3.1.4/lib
>> -L/opt/cray/rca/2.1.6_g2c60fbf-2.265/lib64
>> -L/opt/cray/alps/6.3.4-2.21/lib64
>> -L/opt/cray/xpmem/2.1.1_gf9c9084-2.38/lib64
>> -L/opt/cray/dmapp/7.1.1-39.37/lib64
>> -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64
>> -L/opt/cray/ugni/6.0.15-2.2/lib64 -L/opt/cray/udreg/2.3.2-7.54/lib64
>> -L/opt/cray/pe/atp/2.1.0/libApp -L/opt/cray/wlm_detect/1.2.1-3.10/lib64
>> -L/usr/common/software/h5part/1.6.6/lib
>> -L/opt/intel/compilers_and_libraries_2017.2.174/linux/compiler/lib/intel64
>> -L/opt/intel/compilers_and_libraries_2017.2.174/linux/mkl/lib/intel64
>> -L/opt/intel/compilers_and_libraries_2017.2.174/linux/compiler/lib/intel64_lin
>> -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib
>> -lhdf5hl_fortran_parallel -lhdf5_fortran_parallel >&5
>>> ifort: remark #10397: optimization reports are generated in *.optrpt
>> files in the output location
>>> configure:4481: $? = 0
>>> configure:4488: ./conftest
>>> libhugetlbfs [cori10:124117]: WARNING: Hugepage size 2097152
>> unavailable
>>> Please verify that both the operating system and the processor
>> support Intel(R) AVX512F, ADX, RDSEED, AVX512ER, AVX512PF and AVX512CD
>> instructions.
>>> 
>>>   Matt
>>> 
>>> On Thu, Jul 13, 2017 at 12:21 PM, Matthew Knepley <knepley at gmail.com>
>> wrote:
>>> Toby, this is from the p4est configure:
>>> 
>>> o---------------------------------------
>>> | Checking MPI and related programs
>>> o---------------------------------------
>>> checking whether we are using MPI... yes
>>> checking whether we are using MPI I/O... yes
>>> checking whether we are using MPI_Init_thread... yes
>>> checking for mpiexec... no
>>> checking for mpirun... no
>>> configure:                             F77 set to ftn
>>> configure:                              FC set to ftn
>>> configure:                              CC set to cc
>>> configure:                             CXX set to CC
>>> checking whether the Fortran 77 compiler works... yes
>>> checking for Fortran 77 compiler default output file name... a.out
>>> checking for suffix of executables... 
>>> checking whether we are cross compiling...configure: error: in
>> `/global/u2/m/madams/petsc/arch-cori-knl-opt-intel/externalpackages/git.p4est':
>>> configure: error: cannot run Fortran 77 compiled programs.
>>> If you meant to cross compile, use `--host'.
>>> See `config.log' for more details
>>> 
>>> Mark, gets us
>> /global/u2/m/madams/petsc/arch-cori-knl-opt-intel/externalpackages/git.p4est/config.log
>>> 
>>>  Thanks,
>>> 
>>>     Matt
>>> 
>>> 
>>> On Thu, Jul 13, 2017 at 11:15 AM, Mark Adams <mfadams at lbl.gov> wrote:
>>> I always get this error on Cori at NERSC, KNL, but I can usually
>> rerun configure and it runs the second time. Well, I can't seem to get
>> this to work now.
>>> Thanks,
>>> Mark
>>> 
>>> 
>>> 
>>> -- 
>>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which
>> their experiments lead.
>>> -- Norbert Wiener
>>> 
>>> http://www.caam.rice.edu/~mk51/
>>> 
>>> 
>>> 
>>> 
>>> -- 
>>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which
>> their experiments lead.
>>> -- Norbert Wiener
>>> 
>>> http://www.caam.rice.edu/~mk51/