[petsc-dev] configure failure

[Matthew Knepley]

On Thu, Jul 13, 2017 at 12:32 PM, Mark Adams <mfadams at lbl.gov> wrote:

Are you cross-compiling there?

configure:4469: checking whether we are cross compiling
configure:4477: ftn -o conftest -g -O -fp-model fast -qopt-report=5
-qopenmp-simd  conftest.f
-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib
-L/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib -lflapack
-Wl,-rpath,/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib
-L/global/homes/m/madams/petsc/arch-cori-knl-opt-intel/lib -lfblas
-L/opt/cray/pe/mpt/7.4.4/gni/sma/lib64
-L/opt/cray/pe/libsci/16.09.1/INTEL/15.0/mic_knl/lib
-L/opt/cray/pe/hdf5-parallel/1.10.0/INTEL/15.0/lib
-L/opt/cray/dmapp/default/lib64
-L/opt/cray/pe/mpt/7.4.4/gni/mpich-intel/16.0/lib
-L/usr/common/software/darshan/3.1.4/lib
-L/opt/cray/rca/2.1.6_g2c60fbf-2.265/lib64
-L/opt/cray/alps/6.3.4-2.21/lib64
-L/opt/cray/xpmem/2.1.1_gf9c9084-2.38/lib64
-L/opt/cray/dmapp/7.1.1-39.37/lib64
-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64
-L/opt/cray/ugni/6.0.15-2.2/lib64 -L/opt/cray/udreg/2.3.2-7.54/lib64
-L/opt/cray/pe/atp/2.1.0/libApp -L/opt/cray/wlm_detect/1.2.1-3.10/lib64
-L/usr/common/software/h5part/1.6.6/lib
-L/opt/intel/compilers_and_libraries_2017.2.174/linux/compiler/lib/intel64
-L/opt/intel/compilers_and_libraries_2017.2.174/linux/mkl/lib/intel64
-L/opt/intel/compilers_and_libraries_2017.2.174/linux/compiler/lib/intel64_lin
-L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib
-lhdf5hl_fortran_parallel -lhdf5_fortran_parallel >&5
ifort: remark #10397: optimization reports are generated in *.optrpt files
in the output location
configure:4481: $? = 0
configure:4488: ./conftest
libhugetlbfs [cori10:124117]: WARNING: Hugepage size 2097152 unavailable
Please verify that both the operating system and the processor support
Intel(R) AVX512F, ADX, RDSEED, AVX512ER, AVX512PF and AVX512CD instructions.

   Matt

On Thu, Jul 13, 2017 at 12:21 PM, Matthew Knepley <knepley at gmail.com> wrote:
>
>> Toby, this is from the p4est configure:
>>
>> o---------------------------------------
>> | Checking MPI and related programs
>> o---------------------------------------
>> checking whether we are using MPI... yes
>> checking whether we are using MPI I/O... yes
>> checking whether we are using MPI_Init_thread... yes
>> checking for mpiexec... no
>> checking for mpirun... no
>> configure:                             F77 set to ftn
>> configure:                              FC set to ftn
>> configure:                              CC set to cc
>> configure:                             CXX set to CC
>> checking whether the Fortran 77 compiler works... yes
>> checking for Fortran 77 compiler default output file name... a.out
>> checking for suffix of executables...
>> checking whether we are cross compiling...configure: error: in
>> `/global/u2/m/madams/petsc/arch-cori-knl-opt-intel/externalp
>> ackages/git.p4est':
>> configure: error: cannot run Fortran 77 compiled programs.
>> If you meant to cross compile, use `--host'.
>> See `config.log' for more details
>>
>> Mark, gets us /global/u2/m/madams/petsc/arch
>> -cori-knl-opt-intel/externalpackages/git.p4est/config.log
>>
>>   Thanks,
>>
>>      Matt
>>
>>
>> On Thu, Jul 13, 2017 at 11:15 AM, Mark Adams <mfadams at lbl.gov> wrote:
>>
>>> I always get this error on Cori at NERSC, KNL, but I can usually rerun
>>> configure and it runs the second time. Well, I can't seem to get this to
>>> work now.
>>> Thanks,
>>> Mark
>>>
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> http://www.caam.rice.edu/~mk51/
>>
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

http://www.caam.rice.edu/~mk51/
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