[petsc-dev] snes_monitor_residual

[Mark Adams]

I ran with:

-snes_monitor_residual hdf5:res.h5
-snes_monitor_solution hdf5:sol.h5

and got h5 files that look OK:

-rw-r--r--  1 markadams  staff   19760 Dec 21 13:46 res.h5
-rw-r--r--  1 markadams  staff   19760 Dec 21 13:46 sol.h5

but then got this. Am I doing this wrong?

13:46 multi-species *+> ~/Codes/landaufem/Plex$
~/Codes/petsc/bin/petsc_gen_xdmf.py res.h5
Traceback (most recent call last):
  File "/Users/markadams/Codes/petsc/bin/petsc_gen_xdmf.py", line 241, in
<module>
    generateXdmf(f)
  File "/Users/markadams/Codes/petsc/bin/petsc_gen_xdmf.py", line 211, in
generateXdmf
    geom      = h5['geometry']
  File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
(/Users/travis/build/MacPython/h5py-wheels/h5py/h5py/_objects.c:2405)
  File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
(/Users/travis/build/MacPython/h5py-wheels/h5py/h5py/_objects.c:2362)
  File
"/Users/markadams/homebrew/lib/python2.7/site-packages/h5py/_hl/group.py",
line 160, in __getitem__
    oid = h5o.open(self.id, self._e(name), lapl=self._lapl)
  File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
(/Users/travis/build/MacPython/h5py-wheels/h5py/h5py/_objects.c:2405)
  File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
(/Users/travis/build/MacPython/h5py-wheels/h5py/h5py/_objects.c:2362)
  File "h5py/h5o.pyx", line 190, in h5py.h5o.open
(/Users/travis/build/MacPython/h5py-wheels/h5py/h5py/h5o.c:3456)
KeyError: "Unable to open object (Object 'geometry' doesn't exist)"
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