[petsc-dev] Error message while make test petsc-master

[Hector E Barrios Molano]

Hi PETSc Experts!

I'm compiling petsc-master, configuration and compilation goes ok.

While making the tests to verify the compilation I got an error message,
however the report also says the tests were successful. Is the libimf.so
warning causing the error message?

Here is the output from the test:

make PETSC_DIR=/home/hector/dwnld_prog/petsc-master
PETSC_ARCH=linux-intel-debug test
Running test examples to verify correct installation
Using PETSC_DIR=/home/hector/dwnld_prog/petsc-master and
PETSC_ARCH=linux-intel-debug
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex19
*********************************************************************************
/home/hector/installed/openmpi-intel/bin/mpicc -o ex19.o -c -Wall
-Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3
-I/home/hector/dwnld_prog/petsc-master/include
-I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include
-I/home/hector/installed/petsc3.6-intel-debug/include
-I/home/hector/installed/zoltan/include
-I/home/hector/installed/parmetis/include -I/home/hector/installed/include
-I/home/hector/installed/openmpi-intel/include    `pwd`/ex19.c
/home/hector/installed/openmpi-intel/bin/mpicc -Wall -Wwrite-strings
-Wno-strict-aliasing -Wno-unknown-pragmas -g3  -o ex19  ex19.o
-L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib  -lpetsc
-Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static
-lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64
-Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib
-L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE
-L/home/hector/installed/openmpi-intel/lib
-L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/home/hector/installed/gcc-5.1/lib64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64
-L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core
-lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib
-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++
-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread
-Wl,-rpath,/home/hector/installed/zoltan/lib
-L/home/hector/installed/zoltan/lib -lzoltan
-Wl,-rpath,/home/hector/installed/parmetis/lib
-L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps
-lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core
-lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc
-lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64
-lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz
-L/home/hector/installed/openmpi-intel/lib
-L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/home/hector/installed/gcc-5.1/lib64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64
-L/home/hector/installed/gcc-5.1/lib -ldl
-Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static
-lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static
-L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static
-L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread
-Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl
-Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a
/home/hector/mkl_static/libmkl_core.a
/home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl
-lpthread -lm
/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so:
warning: warning: feupdateenv is not implemented and will always fail
/bin/rm -f ex19.o
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
process
C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
processes
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex5f
*********************************************************
/home/hector/installed/openmpi-intel/bin/mpif90 -c -openmp -openmp-link
static -g    -I/home/hector/dwnld_prog/petsc-master/include
-I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include
-I/home/hector/installed/petsc3.6-intel-debug/include
-I/home/hector/installed/zoltan/include
-I/home/hector/installed/parmetis/include -I/home/hector/installed/include
-I/home/hector/installed/openmpi-intel/include    -o ex5f.o ex5f.F
/home/hector/installed/openmpi-intel/bin/mpif90 -openmp -openmp-link static
-openmp -openmp-link static -g   -o ex5f ex5f.o
-L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib  -lpetsc
-Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static
-lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64
-Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib
-L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE
-L/home/hector/installed/openmpi-intel/lib
-L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/home/hector/installed/gcc-5.1/lib64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64
-L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core
-lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib
-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++
-lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread
-Wl,-rpath,/home/hector/installed/zoltan/lib
-L/home/hector/installed/zoltan/lib -lzoltan
-Wl,-rpath,/home/hector/installed/parmetis/lib
-L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps
-lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm
-lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core
-lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc
-lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64
-lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz
-L/home/hector/installed/openmpi-intel/lib
-L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0
-L/home/hector/installed/gcc-5.1/lib64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64
-L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64
-L/home/hector/installed/gcc-5.1/lib -ldl
-Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static
-lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static
-L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static
-L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread
-Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl
-Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a
/home/hector/mkl_static/libmkl_core.a
/home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl
-lpthread -lm
/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so:
warning: warning: feupdateenv is not implemented and will always fail
/bin/rm -f ex5f.o
Fortran example src/snes/examples/tutorials/ex5f run successfully with 1
MPI process
Completed test examples
=========================================



Here is the configuration command I used:

./configure --prefix=/home/hector/installed/petsc3.6-intel-debug
--PETSC_DIR=/home/hector/dwnld_prog/petsc-master
--PETSC_ARCH=linux-intel-debug
--with-mpi-dir=/home/hector/installed/openmpi-intel/
--with-parmetis-dir=/home/hector/installed/parmetis/
--with-metis-dir=/home/hector/installed/parmetis/
--with-zoltan-dir=/home/hector/installed/zoltan/ --download-ptscotch
--download-hypre
--with-blas-lapack-lib=[/home/hector/mkl_static/libmkl_intel_lp64.a,/home/hector/mkl_static/libmkl_core.a,/home/hector/mkl_static/libmkl_intel_thread.a]
--with-scalapack-include=/share/apps/intel2/mkl/include
--with-scalapack-lib=[/home/hector/mkl_static/libmkl_scalapack_lp64.a,/home/hector/mkl_static/libmkl_blacs_openmpi_lp64.a]
--with-valgrind=1 --with-valgrind-dir=/home/hector/installed
--with-shared-libraries=0 --with-fortran-interfaces=1
--FC_LINKER_FLAGS="-openmp -openmp-link static" --FFLAGS="-openmp
-openmp-link static" --LIBS="-Wl,--start-group
/home/hector/mkl_static/libmkl_intel_lp64.a
/home/hector/mkl_static/libmkl_core.a
/home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl
-lpthread -lm"

Thanks for your help!

Hector
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