<div dir="ltr"><div><div><div><div><div><div>Hi PETSc Experts!<br><br></div>I'm compiling petsc-master, configuration and compilation goes ok.<br><br></div>While making the tests to verify the compilation I got an error message, however the report also says the tests were successful. Is the libimf.so warning causing the error message?<br><br></div>Here is the output from the test:<br><br>make PETSC_DIR=/home/hector/dwnld_prog/petsc-master PETSC_ARCH=linux-intel-debug test<br>Running test examples to verify correct installation<br>Using PETSC_DIR=/home/hector/dwnld_prog/petsc-master and PETSC_ARCH=linux-intel-debug<br>*******************Error detected during compile or link!*******************<br>See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html">http://www.mcs.anl.gov/petsc/documentation/faq.html</a><br>/home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex19<br>*********************************************************************************<br>/home/hector/installed/openmpi-intel/bin/mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3   -I/home/hector/dwnld_prog/petsc-master/include -I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include -I/home/hector/installed/petsc3.6-intel-debug/include -I/home/hector/installed/zoltan/include -I/home/hector/installed/parmetis/include -I/home/hector/installed/include -I/home/hector/installed/openmpi-intel/include    `pwd`/ex19.c<br>/home/hector/installed/openmpi-intel/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3  -o ex19  ex19.o -L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib  -lpetsc -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib -L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/zoltan/lib -L/home/hector/installed/zoltan/lib -lzoltan -Wl,-rpath,/home/hector/installed/parmetis/lib -L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc -lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -ldl -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl -Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm<br>/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail<br>/bin/rm -f ex19.o<br>C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process<br>C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes<br>*******************Error detected during compile or link!*******************<br>See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html">http://www.mcs.anl.gov/petsc/documentation/faq.html</a><br>/home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex5f<br>*********************************************************<br>/home/hector/installed/openmpi-intel/bin/mpif90 -c -openmp -openmp-link static -g    -I/home/hector/dwnld_prog/petsc-master/include -I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include -I/home/hector/installed/petsc3.6-intel-debug/include -I/home/hector/installed/zoltan/include -I/home/hector/installed/parmetis/include -I/home/hector/installed/include -I/home/hector/installed/openmpi-intel/include    -o ex5f.o ex5f.F<br>/home/hector/installed/openmpi-intel/bin/mpif90 -openmp -openmp-link static -openmp -openmp-link static -g   -o ex5f ex5f.o -L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib  -lpetsc -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib -L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/zoltan/lib -L/home/hector/installed/zoltan/lib -lzoltan -Wl,-rpath,/home/hector/installed/parmetis/lib -L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc -lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -ldl -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl -Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm<br>/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail<br>/bin/rm -f ex5f.o<br>Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI process<br>Completed test examples<br>=========================================<br><br><br><br></div>Here is the configuration command I used:<br><br>./configure --prefix=/home/hector/installed/petsc3.6-intel-debug --PETSC_DIR=/home/hector/dwnld_prog/petsc-master --PETSC_ARCH=linux-intel-debug --with-mpi-dir=/home/hector/installed/openmpi-intel/ --with-parmetis-dir=/home/hector/installed/parmetis/ --with-metis-dir=/home/hector/installed/parmetis/ --with-zoltan-dir=/home/hector/installed/zoltan/ --download-ptscotch --download-hypre --with-blas-lapack-lib=[/home/hector/mkl_static/libmkl_intel_lp64.a,/home/hector/mkl_static/libmkl_core.a,/home/hector/mkl_static/libmkl_intel_thread.a] --with-scalapack-include=/share/apps/intel2/mkl/include --with-scalapack-lib=[/home/hector/mkl_static/libmkl_scalapack_lp64.a,/home/hector/mkl_static/libmkl_blacs_openmpi_lp64.a] --with-valgrind=1 --with-valgrind-dir=/home/hector/installed --with-shared-libraries=0 --with-fortran-interfaces=1 --FC_LINKER_FLAGS="-openmp -openmp-link static" --FFLAGS="-openmp -openmp-link static" --LIBS="-Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm"<br><br></div>Thanks for your help!<br><br></div>Hector<br></div>