[petsc-dev] Fortran libraries cannot be used with C++ compiler

Tue Apr 1 09:53:20 CDT 2014

I am a fortran programmer so, i don’t know how to check this. 
I have the latest suite of Intel Compiler. (Intel Cluster Studio XE 2013).
Which type of check can i do to see if it is working c++ compiler?
In the configure.log, it seems that some sources are compiled while this no, or i have seen wrong?

Pierpaolo

Il giorno 01/apr/2014, alle ore 16:29, Matthew Knepley <knepley at gmail.com> ha scritto:

> On Tue, Apr 1, 2014 at 9:20 AM, Pierpaolo Minelli <pierpaolo.minelli at ba.imip.cnr.it> wrote:
> Hi,
> 
> Thanks for your reply. I tried with --with-cxxlib-autodetect=0 but i obtain the same error.
> In attachment you can find configure.log for both cases:
> configure.log is my original log (without using --with-cxxlib-autodetect=0)
> configure.log.new is new log produced when i try to use option --with-cxxlib-autodetect=0
> 
> This appears to be a problem with your MPI:
> 
> ld: MPIR_Thread: TLS definition in /opt/intel/impi/4.1.3.048/intel64/lib/libmpi_mt.so section .tbss mismatches non-TLS definition in /opt/intel/impi/4.1.3.048/intel64/lib/libmpi.so section .bss
> /opt/intel/impi/4.1.3.048/intel64/lib/libmpi.so: could not read symbols: Bad value
>             Popping language Cxx
>         compilers: Cannot compile/link Cxx with mpiicpc.
> 
> Can you run anything with it?
> 
>    Matt
>  
> Thanks,
> 
> Pierpaolo
> 
> 
> 
> 
> Il giorno 01/apr/2014, alle ore 15:02, Matthew Knepley <knepley at gmail.com> ha scritto:
> 
>> On Tue, Apr 1, 2014 at 5:15 AM, Pierpaolo Minelli <pierpaolo.minelli at ba.imip.cnr.it> wrote:
>> Hi,
>> 
>> i have some problems when i try to configure latest version of petsc-dev. 
>> I use this command that was working with a previous version:
>> 
>> ./configure --PETSC_DIR=/raid0/users/cscppm59/Installers/petsc --PETSC_ARCH=petsc_dev --with-debugger=idbc --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --CFLAGS="-openmp -parallel" --FFLAGS="-ftz -O3 -prec-div -xSSE2 -mcmodel medium -shared-intel -openmp -parallel -fpp" --with-large-file-io=1 --with-debugging=0 --with-mpiexec="mpirun -f ~/mpd.hosts -r ssh" --with-blas-lapack-dir=/opt/intel/mkl/lib/intel64/ --with-threadcomm --with-openmp --with-x=0 --download-superlu_dist --download-parmetis -download-hypre -download-ml --download-metis
>> 
>> and i receive this error:
>> 
>> *******************************************************************************
>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>> -------------------------------------------------------------------------------
>> Fortran libraries cannot be used with C++ compiler.
>>  Run with --with-fc=0 or --with-cxx=0
>> *******************************************************************************
>>   File "./config/configure.py", line 272, in petsc_configure
>>     framework.configure(out = sys.stdout)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure
>>     child.configure()
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1396, in configure
>>     self.executeTest(self.checkFortranLibraries)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest
>>     ret = test(*args,**kargs)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1050, in checkFortranLibraries
>>     raise RuntimeError('Fortran libraries cannot be used with C++ compiler.\n Run with --with-fc=0 or --with-cxx=0')
>> ================================================================================
>> Finishing Configure Run at Tue Apr  1 11:33:05 2014
>> ================================================================================
>> 
>> Send configure.log for this case. You can also try --with-cxxlib-autodetect=0. This means you might have to put the C++
>> compiler libraries in --LIBS=<>.
>> 
>>   Thanks,
>> 
>>      Matt
>>  
>> So i tried to configure using --with-cxx=0 since i use fortran and i receive a new error:
>> 
>> *******************************************************************************
>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>> -------------------------------------------------------------------------------
>> Error: Hypre requires C++ compiler. None specified
>> *******************************************************************************
>>   File "./config/configure.py", line 272, in petsc_configure
>>     framework.configure(out = sys.stdout)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure
>>     child.configure()
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 605, in configure
>>     self.executeTest(self.configureLibrary)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest
>>     ret = test(*args,**kargs)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 533, in configureLibrary
>>     for location, directory, lib, incl in self.generateGuesses():
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 266, in generateGuesses
>>     d = self.checkDownload(1)
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 382, in checkDownload
>>     return self.getInstallDir()
>>   File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 221, in getInstallDir
>>     return os.path.abspath(self.Install())
>>   File "/home/users/cscppm59/Installers/petsc/config/PETSc/packages/hypre.py", line 48, in Install
>>     raise RuntimeError('Error: Hypre requires C++ compiler. None specified')
>> ================================================================================
>> Finishing Configure Run at Tue Apr  1 11:45:23 2014
>> ================================================================================
>> 
>> Is there someone that could give me a workaround to solve this problem?
>> 
>> Thanks in advance
>> 
>> 
>> 
>> 
>> -- 
>> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
>> -- Norbert Wiener
> 
> 
> 
> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener

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