<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">I am a fortran programmer so, i don’t know how to check this. <div>I have the latest suite of Intel Compiler. (Intel Cluster Studio XE 2013).</div><div>Which type of check can i do to see if it is working c++ compiler?</div><div>In the configure.log, it seems that some sources are compiled while this no, or i have seen wrong?</div><div><br></div><div>Pierpaolo</div><div><br></div><div><br><div><div>Il giorno 01/apr/2014, alle ore 16:29, Matthew Knepley <<a href="mailto:knepley@gmail.com">knepley@gmail.com</a>> ha scritto:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Tue, Apr 1, 2014 at 9:20 AM, Pierpaolo Minelli<span class="Apple-converted-space"> </span><span dir="ltr"><<a href="mailto:pierpaolo.minelli@ba.imip.cnr.it" target="_blank">pierpaolo.minelli@ba.imip.cnr.it</a>></span><span class="Apple-converted-space"> </span>wrote:<br><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;">Hi,<div><br></div><div>Thanks for your reply. I tried with --with-cxxlib-autodetect=0 but i obtain the same error.</div><div>In attachment you can find configure.log for both cases:</div><div>configure.log is my original log (without using --with-cxxlib-autodetect=0)</div><div>configure.log.new is new log produced when i try to use option --with-cxxlib-autodetect=0</div></div></blockquote><div><br></div><div>This appears to be a problem with your MPI:</div><div><br></div><div><div>ld: MPIR_Thread: TLS definition in /opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi_mt.so">4.1.3.048/intel64/lib/libmpi_mt.so</a><span class="Apple-converted-space"> </span>section .tbss mismatches non-TLS definition in /opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi.so">4.1.3.048/intel64/lib/libmpi.so</a><span class="Apple-converted-space"> </span>section .bss</div><div>/opt/intel/impi/<a href="http://4.1.3.048/intel64/lib/libmpi.so">4.1.3.048/intel64/lib/libmpi.so</a>: could not read symbols: Bad value</div><div> Popping language Cxx</div><div> compilers: Cannot compile/link Cxx with mpiicpc.</div></div><div><br></div><div>Can you run anything with it?</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;"><div>Thanks,</div><div><br></div><div>Pierpaolo</div><div><br></div><div></div></div><br><div style="word-wrap: break-word;"><div></div></div><br><div style="word-wrap: break-word;"><div></div><div><br></div><div><div><div>Il giorno 01/apr/2014, alle ore 15:02, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>> ha scritto:</div><br><blockquote type="cite"><div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Tue, Apr 1, 2014 at 5:15 AM, Pierpaolo Minelli<span class="Apple-converted-space"> </span><span dir="ltr"><<a href="mailto:pierpaolo.minelli@ba.imip.cnr.it" target="_blank">pierpaolo.minelli@ba.imip.cnr.it</a>></span><span class="Apple-converted-space"> </span>wrote:<br><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;">Hi,<div><br></div><div>i have some problems when i try to configure latest version of petsc-dev. </div><div>I use this command that was working with a previous version:</div><div><br></div><div><div style="margin: 0px; font-size: 14px; font-family: Menlo;">./configure --PETSC_DIR=/raid0/users/cscppm59/Installers/petsc --PETSC_ARCH=petsc_dev --with-debugger=idbc --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --CFLAGS="-openmp -parallel" --FFLAGS="-ftz -O3 -prec-div -xSSE2 -mcmodel medium -shared-intel -openmp -parallel -fpp" --with-large-file-io=1 --with-debugging=0 --with-mpiexec="mpirun -f ~/mpd.hosts -r ssh" --with-blas-lapack-dir=/opt/intel/mkl/lib/intel64/ --with-threadcomm --with-openmp --with-x=0 --download-superlu_dist --download-parmetis -download-hypre -download-ml --download-metis</div></div><div style="margin: 0px; font-size: 14px; font-family: Menlo;"><br></div><div style="margin: 0px; font-size: 14px; font-family: Menlo;">and i receive this error:</div><div style="margin: 0px; font-size: 14px; font-family: Menlo;"><br></div><div style="margin: 0px; font-size: 14px; font-family: Menlo;"><div style="margin: 0px;">*******************************************************************************</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div><div style="margin: 0px;">-------------------------------------------------------------------------------</div><div style="margin: 0px;">Fortran libraries cannot be used with C++ compiler.</div><div style="margin: 0px;"> Run with --with-fc=0 or --with-cxx=0</div><div style="margin: 0px;">*******************************************************************************</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "./config/configure.py", line 272, in petsc_configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>framework.configure(out = sys.stdout)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>child.configure()</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1396, in configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>self.executeTest(self.checkFortranLibraries)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>ret = test(*args,**kargs)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/compilers.py", line 1050, in checkFortranLibraries</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>raise RuntimeError('Fortran libraries cannot be used with C++ compiler.\n Run with --with-fc=0 or --with-cxx=0')</div><div style="margin: 0px;">================================================================================</div><div style="margin: 0px;">Finishing Configure Run at Tue Apr 1 11:33:05 2014</div><div style="margin: 0px;">================================================================================</div></div></div></blockquote><div><br></div><div>Send configure.log for this case. You can also try --with-cxxlib-autodetect=0. This means you might have to put the C++</div><div>compiler libraries in --LIBS=<>.</div><div><br></div><div> <span class="Apple-converted-space"> </span>Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;"><div style="margin: 0px; font-size: 14px; font-family: Menlo;"><div style="margin: 0px;">So i tried to configure using --with-cxx=0 since i use fortran and i receive a new error:</div><div style="margin: 0px;"><br></div><div style="margin: 0px;"><div style="margin: 0px;">*******************************************************************************</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div><div style="margin: 0px;">-------------------------------------------------------------------------------</div><div style="margin: 0px;">Error: Hypre requires C++ compiler. None specified</div><div style="margin: 0px;">*******************************************************************************</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "./config/configure.py", line 272, in petsc_configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>framework.configure(out = sys.stdout)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/framework.py", line 935, in configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>child.configure()</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 605, in configure</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>self.executeTest(self.configureLibrary)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/base.py", line 126, in executeTest</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>ret = test(*args,**kargs)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 533, in configureLibrary</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>for location, directory, lib, incl in self.generateGuesses():</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 266, in generateGuesses</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>d = self.checkDownload(1)</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 382, in checkDownload</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>return self.getInstallDir()</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/BuildSystem/config/package.py", line 221, in getInstallDir</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>return os.path.abspath(self.Install())</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>File "/home/users/cscppm59/Installers/petsc/config/PETSc/packages/hypre.py", line 48, in Install</div><div style="margin: 0px;"> <span class="Apple-converted-space"> </span>raise RuntimeError('Error: Hypre requires C++ compiler. None specified')</div><div style="margin: 0px;">================================================================================</div><div style="margin: 0px;">Finishing Configure Run at Tue Apr 1 11:45:23 2014</div><div style="margin: 0px;">================================================================================</div><div style="margin: 0px;"><br></div><div style="margin: 0px;">Is there someone that could give me a workaround to solve this problem?</div><div style="margin: 0px;"><br></div><div style="margin: 0px;">Thanks in advance</div><div style="margin: 0px;"><br></div></div></div><div></div></div></blockquote></div><br><br clear="all"><div><br></div>--<span class="Apple-converted-space"> </span><br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div></div></blockquote></div><br></div></div><br></blockquote></div><br><br clear="all"><div><br></div>--<span class="Apple-converted-space"> </span><br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div></div></div></blockquote></div><br></div></body></html>