[petsc-dev] Error in PetscMallocValidate

[John Mousel]

Make test ran correctly for both debug and optimized builds. It runs fine
with plain bJacobi/ilu preconditioning.

On Monday, September 23, 2013, Matthew Knepley wrote:

> On Mon, Sep 23, 2013 at 1:14 PM, John Mousel <john.mousel at gmail.com<javascript:_e({}, 'cvml', 'john.mousel at gmail.com');>
> > wrote:
>
>> I just pulled from petsc-dev and I'm now getting the following error. The
>> result from valgrind is pasted below the error message.
>> Any help would be appreciated.
>>
>
> Looks like BLAS errors, but valgrind has a problem with StateIncrease().
> Jed just changed the size of the
> state counter. Are you sure everything rebuilt correctly?
>
>   Matt
>
>
> John
>
>
> [0]PETSC ERROR: PetscMallocValidate: error detected at MatScale_SeqAIJ()
> line 2464 in src/mat/impls/aij/seq/aij.c
> [0]PETSC ERROR: [1]PETSC ERROR: [2]PETSC ERROR: Memory [id=0(48)] at
> address 0x8483450 is corrupted (probably write past end of array)
> [0]PETSC ERROR: Memory originally allocated in
> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c
> PetscMallocValidate: error detected at MatScale_SeqAIJ() line 2464 in
> src/mat/impls/aij/seq/aij.c
> PetscMallocValidate: error detected at MatScale_SeqAIJ() line 2464 in
> src/mat/impls/aij/seq/aij.c
> [2]PETSC ERROR: [1]PETSC ERROR: [0]PETSC ERROR: ---------------------
> Error Message ------------------------------------
> [0]PETSC ERROR: Memory corruption!
> [0]PETSC ERROR:  !
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Development GIT revision:
> b4e904d1358c92c43842a940440f995d2117e40b  GIT Date: 2013-09-23 12:36:08
> +0100
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ../src/CYLINDER_EXE on a gnu-debug named wv.iihr.uiowa.eduby jmousel Mon Sep 23 15:07:15 2013
> [0]PETSC ERROR: Libraries linked from
> /home/jmousel/NumericalLibraries/petsc/gnu-debug/lib
> [0]PETSC ERROR: Configure run at Mon Sep 23 15:04:14 2013
> [0]PETSC ERROR: Configure options --download-cmake=1
> --download-f-blas-lapack=1 --download-metis=1 --download-mpich=1
> --download-parmetis=1 --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
> PETSC_ARCH=gnu-debug
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: PetscMallocValidate() line 149 in src/sys/memory/mtr.c
> [0]PETSC ERROR: MatScale_SeqAIJ() line 2464 in src/mat/impls/aij/seq/aij.c
> [0]PETSC ERROR: MatScale() line 4758 in src/mat/interface/matrix.c
> [0]PETSC ERROR: MatScale_MPIAIJ() line 1262 in
> src/mat/impls/aij/mpi/mpiaij.c
> [0]PETSC ERROR: MatScale() line 4758 in src/mat/interface/matrix.c
> [0]PETSC ERROR: MatAYPX() line 279 in src/mat/utils/axpy.c
> [0]PETSC ERROR: PCGAMGOptprol_AGG() line 1331 in
> src/ksp/pc/impls/gamg/agg.c
> [0]PETSC ERROR: PCSetUp_GAMG() line 597 in src/ksp/pc/impls/gamg/gamg.c
> [0]PETSC ERROR: PCSetUp() line 890 in src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: KSPSetUp() line 278 in src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: KSPSolve() line 399 in src/ksp/ksp/interface/itfunc.c
> Memory [id=0(48)] at address 0x8556ca0 is corrupted (probably write past
> end of array)
> [1]PETSC ERROR: Memory originally allocated in
> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c
> [1]PETSC ERROR: Memory [id=0(48)] at address 0x9308690 is corrupted
> (probably write past end of array)
> --------------------- Error Message ------------------------------------
> [2]PETSC ERROR: Memory originally allocated in
> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c
> [1]PETSC ERROR: Memory corruption!
> [1]PETSC ERROR:  !
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: Petsc Development GIT revision:
> b4e904d1358c92c43842a940440f995d2117e40b  GIT Date: 2013-09-23 12:36:08
> +0100
> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [1]PETSC ERROR: See docs/index.html for manual pages.
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: ../src/CYLINDER_EXE on a gnu-debug named wv.iihr.uiowa.eduby jmousel Mon Sep 23 15:07:15 2013
> [1]PETSC ERROR: Libraries linked from
> /home/jmousel/NumericalLibraries/petsc/gnu-debug/lib
> [1]PETSC ERROR: Configure run at Mon Sep 23 15:04:14 2013
> [1]PETSC ERROR: Configure options --download-cmake=1
> --download-f-blas-lapack=1 --download-metis=1 --download-mpich=1
> --download-parmetis=1 --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
> PETSC_ARCH=gnu-debug
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: PetscMallocValidate() line 149 in src/sys/memory/mtr.c
> [2]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [2]PETSC ERROR: Memory corruption!
> [2]PETSC ERROR:  !
> [2]PETSC ERROR:
> ------------------------------------------------------------------------
> [2]PETSC ERROR: Petsc Development GIT revision: b4e904d1
>
>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
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