[petsc-dev] stuff broken in next
Hong Zhang
hzhang at mcs.anl.gov
Sun Sep 8 22:15:33 CDT 2013
Matt:
On Sun, Sep 8, 2013 at 8:33 PM, Hong Zhang <hzhang at mcs.anl.gov> wrote:
>
>> I'll check error 1, 2 and 4.
>>
>
> The fix is to call PetscSysInitializePackage() in MatCreate() since you
> are using
> PetscContainer.
>
I plan to replace container with a pointer member in struct Mat_MPIAIJ.
Barry does not like container :-(
Hong
>
>>
>> On Sun, Sep 8, 2013 at 6:22 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>>
>>>
>>>
>>> 5 ugly errors in alltests plus the usual painful diffs that should
>>> be empty.
>>>
>>>
>>> Number 1
>>>
>>> =========================================0a1,82
>>> > [0]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> > [0]PETSC ERROR: Invalid argument!
>>> > [0]PETSC ERROR: Invalid object classid 0
>>> > This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES,
>>> but link with static libraries.!
>>> > [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [0]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> > [2]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> > [2]PETSC ERROR: Invalid argument!
>>> > [2]PETSC ERROR: Invalid object classid 0
>>> > This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES,
>>> but link with static libraries.!
>>> > [2]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [2]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> > [2]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> > [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> > [2]PETSC ERROR: See docs/index.html for manual pages.
>>> > [2]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [2]PETSC ERROR: ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local
>>> by barrysmith Sun Sep 8 17:22:29 2013
>>> > [2]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> > [2]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> > [2]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> > [2]PETSC ERROR: [0]PETSC ERROR: See docs/changes/index.html for recent
>>> updates.
>>> > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> > [0]PETSC ERROR: See docs/index.html for manual pages.
>>> > [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> > [1]PETSC ERROR: Invalid argument!
>>> > [1]PETSC ERROR: Invalid object classid 0
>>> > This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES,
>>> but link with static libraries.!
>>> > [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [1]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> > [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> > [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> > [1]PETSC ERROR: See docs/index.html for manual pages.
>>> > [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [2]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > [2]PETSC ERROR: PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun
>>> Sep 8 17:22:29 2013
>>> > [0]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> > [0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> > [0]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> > [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> >
>>> ------------------------------------------------------------------------
>>> > [1]PETSC ERROR: ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local
>>> by barrysmith Sun Sep 8 17:22:29 2013
>>> > [1]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> > [1]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> > [1]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> > [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> > [2]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> > [2]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [2]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [2]PETSC ERROR: [0]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > [0]PETSC ERROR: [1]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > [1]PETSC ERROR: PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > MatMatMult() line 8757 in
>>> /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c
>>> > [2]PETSC ERROR: main() line 62 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c
>>> > PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> > [0]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> > [0]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [1]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> > [1]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [0]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [0]PETSC ERROR: MatMatMult() line 8757 in
>>> /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c
>>> > [0]PETSC ERROR: main() line 62 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c
>>> > [1]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
>>> > [1]PETSC ERROR: MatMatMult() line 8757 in
>>> /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2
>>> > [cli_2]: aborting job:
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>> > [1]PETSC ERROR: main() line 62 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c
>>> > [cli_0]: aborting job:
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
>>> > [cli_1]: aborting job:
>>> > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
>>> >
>>> >
>>> ===================================================================================
>>> > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
>>> > = EXIT CODE: 1
>>> > = CLEANING UP REMAINING PROCESSES
>>> > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>>> >
>>> ===================================================================================
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests
>>> Possible problem with ex109_2, diffs above
>>>
>>> Number 2
>>>
>>> 6a7,9
>>> > WARNING! There are options you set that were not used!
>>> > WARNING! could be spelling mistake, etc!
>>> > Option left: name:-psubcomm_type value: interlaced
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/examples/tutorials
>>> Possible problem with with ex5_redundant_4, diffs above
>>>
>>>
>>> Number 3
>>>
>>> =========================================
>>> 5c5,236
>>> < Nonlinear solve did not converge due to DIVERGED_LINE_SEARCH
>>> iterations 0
>>> ---
>>> > 1 SNES VI Function norm 8.163372808705e-02 Active lower constraints
>>> 7053/7235 upper constraints 0/0 Percent of total 0.749601 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 2.673
>>> > 1 KSP Residual norm 0.000724555
>>> > 2 KSP Residual norm 2.04155e-05
>>> > 2 SNES VI Function norm 7.069074423947e-02 Active lower constraints
>>> 6867/7053 upper constraints 0/0 Percent of total 0.729833 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 2.6202
>>> > 1 KSP Residual norm 0.000660539
>>> > 2 KSP Residual norm 2.24854e-05
>>> > 3 SNES VI Function norm 6.507423547610e-02 Active lower constraints
>>> 6677/6867 upper constraints 0/0 Percent of total 0.70964 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 2.66047
>>> > 1 KSP Residual norm 0.000737759
>>> > 2 KSP Residual norm 1.94446e-05
>>> > 4 SNES VI Function norm 6.003760298551e-02 Active lower constraints
>>> 6487/6677 upper constraints 0/0 Percent of total 0.689446 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 2.57967
>>> > 1 KSP Residual norm 0.000687075
>>> > 2 KSP Residual norm 1.86555e-05
>>> > 5 SNES VI Function norm 5.546429354259e-02 Active lower constraints
>>> 6297/6487 upper constraints 0/0 Percent of total 0.669253 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 2.38229
>>> > 1 KSP Residual norm 0.000797866
>>> > 2 KSP Residual norm 2.02051e-05
>>> > 6 SNES VI Function norm 5.127650993748e-02 Active lower constraints
>>> 6107/6297 upper constraints 0/0 Percent of total 0.649059 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 2.13299
>>> > 1 KSP Residual norm 0.000868182
>>> > 2 KSP Residual norm 2.05078e-05
>>> > 7 SNES VI Function norm 4.743647017375e-02 Active lower constraints
>>> 5917/6107 upper constraints 0/0 Percent of total 0.628866 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.91998
>>> > 1 KSP Residual norm 0.000940245
>>> > 2 KSP Residual norm 2.11283e-05
>>> > 3 KSP Residual norm 4.4243e-07
>>> > 8 SNES VI Function norm 4.393250901762e-02 Active lower constraints
>>> 5723/5917 upper constraints 0/0 Percent of total 0.608247 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.78644
>>> > 1 KSP Residual norm 0.000937063
>>> > 2 KSP Residual norm 1.98631e-05
>>> > 3 KSP Residual norm 4.2512e-07
>>> > 9 SNES VI Function norm 4.074814326708e-02 Active lower constraints
>>> 5533/5723 upper constraints 0/0 Percent of total 0.588054 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.71837
>>> > 1 KSP Residual norm 0.000896483
>>> > 2 KSP Residual norm 2.00187e-05
>>> > 3 KSP Residual norm 4.43605e-07
>>> > 10 SNES VI Function norm 3.743247300660e-02 Active lower constraints
>>> 5343/5533 upper constraints 0/0 Percent of total 0.567861 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.59926
>>> > 1 KSP Residual norm 0.000803251
>>> > 2 KSP Residual norm 1.83603e-05
>>> > 3 KSP Residual norm 4.14208e-07
>>> > 11 SNES VI Function norm 3.486905663353e-02 Active lower constraints
>>> 5153/5343 upper constraints 0/0 Percent of total 0.547667 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.44285
>>> > 1 KSP Residual norm 0.00065968
>>> > 2 KSP Residual norm 1.73149e-05
>>> > 3 KSP Residual norm 4.06698e-07
>>> > 12 SNES VI Function norm 3.302767841301e-02 Active lower constraints
>>> 4963/5153 upper constraints 0/0 Percent of total 0.527474 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.31481
>>> > 1 KSP Residual norm 0.000539611
>>> > 2 KSP Residual norm 1.4902e-05
>>> > 3 KSP Residual norm 3.53455e-07
>>> > 13 SNES VI Function norm 3.145463312751e-02 Active lower constraints
>>> 4773/4963 upper constraints 0/0 Percent of total 0.50728 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.21457
>>> > 1 KSP Residual norm 0.00045629
>>> > 2 KSP Residual norm 1.33211e-05
>>> > 3 KSP Residual norm 3.04759e-07
>>> > 14 SNES VI Function norm 3.004175705452e-02 Active lower constraints
>>> 4583/4773 upper constraints 0/0 Percent of total 0.487087 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.13291
>>> > 1 KSP Residual norm 0.000395063
>>> > 2 KSP Residual norm 1.15424e-05
>>> > 3 KSP Residual norm 2.60715e-07
>>> > 15 SNES VI Function norm 2.876325782774e-02 Active lower constraints
>>> 4393/4583 upper constraints 0/0 Percent of total 0.466893 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.06417
>>> > 1 KSP Residual norm 0.000364522
>>> > 2 KSP Residual norm 1.04747e-05
>>> > 16 SNES VI Function norm 2.760470906290e-02 Active lower constraints
>>> 4203/4393 upper constraints 0/0 Percent of total 0.4467 Percent of bounded 0
>>> > 0 KSP Residual norm 1.00549
>>> > 1 KSP Residual norm 0.000326304
>>> > 2 KSP Residual norm 9.34975e-06
>>> > 17 SNES VI Function norm 2.655295309482e-02 Active lower constraints
>>> 4013/4203 upper constraints 0/0 Percent of total 0.426507 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.954332
>>> > 1 KSP Residual norm 0.00032105
>>> > 2 KSP Residual norm 9.08764e-06
>>> > 18 SNES VI Function norm 2.559478787217e-02 Active lower constraints
>>> 3823/4013 upper constraints 0/0 Percent of total 0.406313 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.909227
>>> > 1 KSP Residual norm 0.000291792
>>> > 2 KSP Residual norm 8.23083e-06
>>> > 19 SNES VI Function norm 2.471758098046e-02 Active lower constraints
>>> 3633/3823 upper constraints 0/0 Percent of total 0.38612 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 0.868511
>>> > 1 KSP Residual norm 0.000296352
>>> > 2 KSP Residual norm 8.17352e-06
>>> > 20 SNES VI Function norm 2.390947757020e-02 Active lower constraints
>>> 3443/3633 upper constraints 0/0 Percent of total 0.365926 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.831379
>>> > 1 KSP Residual norm 0.000268578
>>> > 2 KSP Residual norm 7.42438e-06
>>> > 21 SNES VI Function norm 2.315991829418e-02 Active lower constraints
>>> 3253/3443 upper constraints 0/0 Percent of total 0.345733 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.796738
>>> > 1 KSP Residual norm 0.000276534
>>> > 2 KSP Residual norm 7.76815e-06
>>> > 22 SNES VI Function norm 2.245961364043e-02 Active lower constraints
>>> 3063/3253 upper constraints 0/0 Percent of total 0.325539 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.764265
>>> > 1 KSP Residual norm 0.000253254
>>> > 2 KSP Residual norm 7.1178e-06
>>> > 23 SNES VI Function norm 2.180076317077e-02 Active lower constraints
>>> 2873/3063 upper constraints 0/0 Percent of total 0.305346 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.733311
>>> > 1 KSP Residual norm 0.000262892
>>> > 2 KSP Residual norm 7.42148e-06
>>> > 3 KSP Residual norm 1.70668e-07
>>> > 24 SNES VI Function norm 2.117696491418e-02 Active lower constraints
>>> 2683/2873 upper constraints 0/0 Percent of total 0.285153 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.70386
>>> > 1 KSP Residual norm 0.000238463
>>> > 2 KSP Residual norm 6.68442e-06
>>> > 25 SNES VI Function norm 2.058276052298e-02 Active lower constraints
>>> 2493/2683 upper constraints 0/0 Percent of total 0.264959 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.675486
>>> > 1 KSP Residual norm 0.00024684
>>> > 2 KSP Residual norm 7.06239e-06
>>> > 3 KSP Residual norm 1.58775e-07
>>> > 26 SNES VI Function norm 2.001420296231e-02 Active lower constraints
>>> 2303/2493 upper constraints 0/0 Percent of total 0.244766 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.648322
>>> > 1 KSP Residual norm 0.000225464
>>> > 2 KSP Residual norm 6.39276e-06
>>> > 27 SNES VI Function norm 1.946781277069e-02 Active lower constraints
>>> 2113/2303 upper constraints 0/0 Percent of total 0.224572 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.622075
>>> > 1 KSP Residual norm 0.000234544
>>> > 2 KSP Residual norm 6.71028e-06
>>> > 3 KSP Residual norm 1.51711e-07
>>> > 28 SNES VI Function norm 1.894178583580e-02 Active lower constraints
>>> 1924/2113 upper constraints 0/0 Percent of total 0.204485 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.597384
>>> > 1 KSP Residual norm 0.000212332
>>> > 2 KSP Residual norm 5.95889e-06
>>> > 29 SNES VI Function norm 1.852853457419e-02 Active lower constraints
>>> 1750/1924 upper constraints 0/0 Percent of total 0.185992 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.706391
>>> > 1 KSP Residual norm 0.000567236
>>> > 2 KSP Residual norm 8.53675e-06
>>> > 3 KSP Residual norm 1.60829e-07
>>> > 30 SNES VI Function norm 1.754837946520e-02 Active lower constraints
>>> 1598/1750 upper constraints 0/0 Percent of total 0.169837 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 0.93473
>>> > 1 KSP Residual norm 0.000481758
>>> > 2 KSP Residual norm 8.20428e-06
>>> > 31 SNES VI Function norm 1.676862871820e-02 Active lower constraints
>>> 1460/1598 upper constraints 0/0 Percent of total 0.155171 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.13488
>>> > 1 KSP Residual norm 0.000316588
>>> > 2 KSP Residual norm 6.62252e-06
>>> > 32 SNES VI Function norm 1.610357401507e-02 Active lower constraints
>>> 1332/1460 upper constraints 0/0 Percent of total 0.141567 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.27503
>>> > 1 KSP Residual norm 0.000313101
>>> > 2 KSP Residual norm 6.45637e-06
>>> > 33 SNES VI Function norm 1.554556364768e-02 Active lower constraints
>>> 1212/1332 upper constraints 0/0 Percent of total 0.128813 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.40972
>>> > 1 KSP Residual norm 0.000346546
>>> > 2 KSP Residual norm 7.29221e-06
>>> > 34 SNES VI Function norm 1.507695156052e-02 Active lower constraints
>>> 1100/1212 upper constraints 0/0 Percent of total 0.116909 Percent of
>>> bounded 0
>>> > 0 KSP Residual norm 1.53275
>>> > 1 KSP Residual norm 0.000344641
>>> > 2 KSP Residual norm 7.28721e-06
>>> > 35 SNES VI Function norm 1.467826646114e-02 Active lower constraints
>>> 996/1100 upper constraints 0/0 Percent of total 0.105856 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.63198
>>> > 1 KSP Residual norm 0.000482515
>>> > 2 KSP Residual norm 1.11168e-05
>>> > 36 SNES VI Function norm 1.430075725264e-02 Active lower constraints
>>> 898/996 upper constraints 0/0 Percent of total 0.0954405 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.66151
>>> > 1 KSP Residual norm 0.000497655
>>> > 2 KSP Residual norm 9.82952e-06
>>> > 37 SNES VI Function norm 1.403299540129e-02 Active lower constraints
>>> 806/898 upper constraints 0/0 Percent of total 0.0856627 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.7498
>>> > 1 KSP Residual norm 0.000465018
>>> > 2 KSP Residual norm 8.49882e-06
>>> > 38 SNES VI Function norm 1.379741365424e-02 Active lower constraints
>>> 722/806 upper constraints 0/0 Percent of total 0.076735 Percent of bounded 0
>>> > 0 KSP Residual norm 1.80458
>>> > 1 KSP Residual norm 0.000350758
>>> > 2 KSP Residual norm 7.49574e-06
>>> > 39 SNES VI Function norm 1.353352027815e-02 Active lower constraints
>>> 644/722 upper constraints 0/0 Percent of total 0.0684451 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.78002
>>> > 1 KSP Residual norm 0.000343092
>>> > 2 KSP Residual norm 6.2395e-06
>>> > 40 SNES VI Function norm 1.335390303582e-02 Active lower constraints
>>> 572/644 upper constraints 0/0 Percent of total 0.0607929 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.80355
>>> > 1 KSP Residual norm 0.000489046
>>> > 2 KSP Residual norm 1.05897e-05
>>> > 41 SNES VI Function norm 1.311312785191e-02 Active lower constraints
>>> 506/572 upper constraints 0/0 Percent of total 0.0537783 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.74734
>>> > 1 KSP Residual norm 0.000502745
>>> > 2 KSP Residual norm 8.79623e-06
>>> > 42 SNES VI Function norm 1.294474697542e-02 Active lower constraints
>>> 446/506 upper constraints 0/0 Percent of total 0.0474014 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.73656
>>> > 1 KSP Residual norm 0.000331689
>>> > 2 KSP Residual norm 6.99813e-06
>>> > 43 SNES VI Function norm 1.266967930579e-02 Active lower constraints
>>> 392/446 upper constraints 0/0 Percent of total 0.0416622 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.64508
>>> > 1 KSP Residual norm 0.00041459
>>> > 2 KSP Residual norm 8.87392e-06
>>> > 44 SNES VI Function norm 1.240587913199e-02 Active lower constraints
>>> 342/392 upper constraints 0/0 Percent of total 0.0363482 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.5587
>>> > 1 KSP Residual norm 0.00049759
>>> > 2 KSP Residual norm 8.2924e-06
>>> > 45 SNES VI Function norm 1.221158994513e-02 Active lower constraints
>>> 298/342 upper constraints 0/0 Percent of total 0.0316718 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.51519
>>> > 1 KSP Residual norm 0.000295973
>>> > 2 KSP Residual norm 6.4029e-06
>>> > 46 SNES VI Function norm 1.184530415480e-02 Active lower constraints
>>> 260/298 upper constraints 0/0 Percent of total 0.0276331 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.39666
>>> > 1 KSP Residual norm 0.000400468
>>> > 2 KSP Residual norm 8.17936e-06
>>> > 47 SNES VI Function norm 1.147776854528e-02 Active lower constraints
>>> 226/260 upper constraints 0/0 Percent of total 0.0240196 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.28758
>>> > 1 KSP Residual norm 0.000516693
>>> > 2 KSP Residual norm 8.76133e-06
>>> > 48 SNES VI Function norm 1.128662875695e-02 Active lower constraints
>>> 206/226 upper constraints 0/0 Percent of total 0.0218939 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.34679
>>> > 1 KSP Residual norm 0.00018716
>>> > 2 KSP Residual norm 4.46394e-06
>>> > 49 SNES VI Function norm 1.023414773727e-02 Active lower constraints
>>> 200/206 upper constraints 0/0 Percent of total 0.0212562 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 0.733538
>>> > 1 KSP Residual norm 5.3784e-05
>>> > 2 KSP Residual norm 1.92659e-06
>>> > 50 SNES VI Function norm 7.901146653181e-03 Active lower constraints
>>> 198/200 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 0.386062
>>> > 1 KSP Residual norm 0.000108925
>>> > 2 KSP Residual norm 2.31172e-06
>>> > 51 SNES VI Function norm 2.512634762203e-04 Active lower constraints
>>> 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 0.00408659
>>> > 1 KSP Residual norm 2.92958e-05
>>> > 2 KSP Residual norm 1.02766e-06
>>> > 3 KSP Residual norm 5.54081e-08
>>> > 4 KSP Residual norm 1.7915e-09
>>> > 52 SNES VI Function norm 9.542675696205e-07 Active lower constraints
>>> 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 3.21206e-06
>>> > 1 KSP Residual norm 5.05625e-08
>>> > 2 KSP Residual norm 1.99096e-09
>>> > 3 KSP Residual norm 5.646e-11
>>> > 4 KSP Residual norm < 1.e-11
>>> > 53 SNES VI Function norm 8.424849253004e-12 Active lower constraints
>>> 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded
>>> 0
>>> > 0 KSP Residual norm 1.852e-11
>>> > 1 KSP Residual norm < 1.e-11
>>> > 2 KSP Residual norm < 1.e-11
>>> > 3 KSP Residual norm < 1.e-11
>>> > 4 KSP Residual norm < 1.e-11
>>> > 54 SNES VI Function norm 2.608107436444e-15 Active lower constraints
>>> 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded
>>> 0
>>> > Nonlinear solve converged due to CONVERGED_FNORM_RELATIVE iterations 54
>>> /Users/barrysmith/Src/petsc/src/snes/examples/tutorials
>>> Possible problem with ex58_1, diffs above
>>> =========================================
>>>
>>> Number 4
>>>
>>> =========================================
>>> [0]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> [0]PETSC ERROR: Invalid argument!
>>> [0]PETSC ERROR: Invalid object classid 0
>>> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but
>>> link with static libraries.!
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> [0]PETSC ERROR: See docs/index.html for manual pages.
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by
>>> barrysmith Sun Sep 8 17:46:31 2013
>>> [1]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> [1]PETSC ERROR: Invalid argument!
>>> [1]PETSC ERROR: Invalid object classid 0
>>> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but
>>> link with static libraries.!
>>> [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [1]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> [1]PETSC ERROR: See docs/index.html for manual pages.
>>> [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [1]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by
>>> barrysmith Sun Sep 8 17:46:31 2013
>>> [1]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> [1]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> [1]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> [1]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [1]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [1]PETSC ERROR: PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [1]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> [1]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [2]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> [2]PETSC ERROR: Invalid argument!
>>> [2]PETSC ERROR: Invalid object classid 0
>>> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but
>>> link with static libraries.!
>>> [2]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [2]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> [2]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> [2]PETSC ERROR: See docs/index.html for manual pages.
>>> [2]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [2]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by
>>> barrysmith Sun Sep 8 17:46:31 2013
>>> [2]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> [2]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> [2]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> [2]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [2]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [2]PETSC ERROR: PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [2]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> [2]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [2]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [2]PETSC ERROR: main() line 41 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c
>>> [0]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> [0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> [0]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: PetscClassRegLogGetClass() line 290 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [0]PETSC ERROR: PetscLogObjCreateDefault() line 317 in
>>> /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c
>>> [0]PETSC ERROR: PetscContainerCreate() line 1018 in
>>> /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c
>>> [1]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [1]PETSC ERROR: main() line 41 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c
>>> [0]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [0]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in
>>> /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c
>>> [0]PETSC ERROR: main() line 41 in
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2
>>> [cli_2]: aborting job:
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>> [cli_0]: aborting job:
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>> [cli_1]: aborting job:
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
>>> 1,31c1,7
>>> < type: mpiaij
>>> < row 0: (0, 0.001) (1, 0.002) (2, 0.003)
>>> < row 1: (1, 0.001) (2, 0.002) (3, 0.003)
>>> < row 2: (2, 0.001) (3, 0.002) (4, 0.003)
>>> < row 3: (3, 0.001) (4, 0.002) (5, 0.003)
>>> < row 4: (4, 0.001) (5, 0.002) (6, 0.003)
>>> < row 5: (5, 0.001) (6, 0.002) (7, 0.003)
>>> < row 6: (6, 0.001) (7, 0.002) (8, 0.003)
>>> < row 7: (7, 0.001) (8, 0.002) (9, 0.003)
>>> < row 8: (8, 0.001) (9, 0.002) (10, 0.003)
>>> < row 9: (9, 0.001) (10, 0.002) (11, 0.003)
>>> < row 10: (10, 0.001) (11, 0.002) (12, 0.003)
>>> < row 11: (11, 0.001) (12, 0.002) (13, 0.003)
>>> < row 12: (12, 0.001) (13, 0.002) (14, 0.003)
>>> < row 13: (13, 0.001) (14, 0.002) (15, 0.003)
>>> < row 14: (14, 0.001) (15, 0.002) (16, 0.003)
>>> < row 15: (15, 0.001) (16, 0.002) (17, 0.003)
>>> < row 16: (16, 0.001) (17, 0.002) (18, 0.003)
>>> < row 17: (17, 0.001) (18, 0.002) (19, 0.003)
>>> < row 18: (18, 0.001) (19, 0.002) (20, 0.003)
>>> < row 19: (19, 0.001) (20, 0.002) (21, 0.003)
>>> < row 20: (20, 0.001) (21, 0.002) (22, 0.003)
>>> < row 21: (21, 0.001) (22, 0.002) (23, 0.003)
>>> < row 22: (22, 0.001) (23, 0.002) (24, 0.003)
>>> < row 23: (23, 0.001) (24, 0.002) (25, 0.003)
>>> < row 24: (24, 0.001) (25, 0.002) (26, 0.003)
>>> < row 25: (25, 0.001) (26, 0.002) (27, 0.003)
>>> < row 26: (26, 0.001) (27, 0.002) (28, 0.003)
>>> < row 27: (27, 0.001) (28, 0.002) (29, 0.003)
>>> < row 28: (28, 0.001) (29, 0.002)
>>> < row 29: (29, 0.001)
>>> ---
>>> >
>>> >
>>> ===================================================================================
>>> > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
>>> > = EXIT CODE: 1
>>> > = CLEANING UP REMAINING PROCESSES
>>> > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>>> >
>>> ===================================================================================
>>> /Users/barrysmith/Src/petsc/src/mat/examples/tests
>>> Possible problem with ex95_1, diffs above
>>>
>>> Number 5
>>>
>>> =========================================
>>> lid velocity = 0.0204082, prandtl # = 1, grashof # = 1
>>> [0]PETSC ERROR: --------------------- Error Message
>>> ------------------------------------
>>> [0]PETSC ERROR: Object is in wrong state!
>>> [0]PETSC ERROR: You called KSPSetDM() but did not use
>>> DMKSPSetComputeOperators() or KSPSetDMActive(dm,PETSC_FALSE);!
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: Petsc Development GIT revision:
>>> 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36
>>> -0500
>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>>> [0]PETSC ERROR: See docs/index.html for manual pages.
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: ./ex19 on a arch-gcc named Barrys-MacBook-Pro.local by
>>> barrysmith Sun Sep 8 17:46:52 2013
>>> [0]PETSC ERROR: Libraries linked from
>>> /Users/barrysmith/Src/petsc/arch-gcc/lib
>>> [0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013
>>> [0]PETSC ERROR: Configure options --download-hypre --download-metis
>>> --download-mpich --download-parmetis --download-superlu
>>> --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc
>>> [0]PETSC ERROR:
>>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: KSPSetUp() line 230 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c
>>> [0]PETSC ERROR: PCSetUp_MG() line 776 in
>>> /Users/barrysmith/Src/petsc/src/ksp/pc/impls/mg/mg.c
>>> [0]PETSC ERROR: PCSetUp() line 888 in
>>> /Users/barrysmith/Src/petsc/src/ksp/pc/interface/precon.c
>>> [0]PETSC ERROR: KSPSetUp() line 278 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c
>>> [0]PETSC ERROR: KSPSolve() line 399 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c
>>> [0]PETSC ERROR: PCApply_FieldSplit() line 877 in
>>> /Users/barrysmith/Src/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
>>> [0]PETSC ERROR: PCApply() line 440 in
>>> /Users/barrysmith/Src/petsc/src/ksp/pc/interface/precon.c
>>> [0]PETSC ERROR: KSP_PCApply() line 227 in
>>> /Users/barrysmith/Src/petsc/include/petsc-private/kspimpl.h
>>> [0]PETSC ERROR: KSPInitialResidual() line 64 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itres.c
>>> [0]PETSC ERROR: KSPSolve_GMRES() line 239 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/impls/gmres/gmres.c
>>> [0]PETSC ERROR: KSPSolve() line 441 in
>>> /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c
>>> [0]PETSC ERROR: SNESSolve_NEWTONLS() line 233 in
>>> /Users/barrysmith/Src/petsc/src/snes/impls/ls/ls.c
>>> [0]PETSC ERROR: SNESSolve() line 3787 in
>>> /Users/barrysmith/Src/petsc/src/snes/interface/snes.c
>>> [0]PETSC ERROR: main() line 160 in
>>> /Users/barrysmith/Src/petsc/src/snes/examples/tutorials/ex19.c
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>> [cli_0]: aborting job:
>>> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>>>
>>>
>>> ===================================================================================
>>> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
>>> = EXIT CODE: 1
>>> = CLEANING UP REMAINING PROCESSES
>>> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>>>
>>> ===================================================================================
>>> make[6]: [runex19_draw] Error 1 (ignored)
>>> ******* Testing: testexamples_Fortran *******
>>>
>>>
>>>
>>>
>>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
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