<div dir="ltr"><div class="gmail_extra">Matt:</div><div class="gmail_extra"><br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">
<div class="im">On Sun, Sep 8, 2013 at 8:33 PM, Hong Zhang <span dir="ltr"><<a href="mailto:hzhang@mcs.anl.gov" target="_blank">hzhang@mcs.anl.gov</a>></span> wrote:<br></div><div class="gmail_extra"><div class="gmail_quote">
<div class="im">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">I'll check error 1, 2 and 4.</div></blockquote>
<div><br></div></div><div>The fix is to call PetscSysInitializePackage() in MatCreate() since you are using</div><div>PetscContainer.</div></div></div></div></blockquote><div> </div><div>I plan to replace container with a pointer member in struct Mat_MPIAIJ.</div>
<div>Barry does not like container :-(</div><div><br></div><div>Hong</div><div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_extra">
<div class="gmail_quote"><div><div class="h5"><div><br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div><div><div class="gmail_extra"><br><br><div class="gmail_quote">On Sun, Sep 8, 2013 at 6:22 PM, Barry Smith <span dir="ltr"><<a href="mailto:bsmith@mcs.anl.gov" target="_blank">bsmith@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><br>
<br>
5 ugly errors in alltests plus the usual painful diffs that should be empty.<br>
<br>
<br>
Number 1<br>
<br>
=========================================0a1,82<br>
> [0]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
> [0]PETSC ERROR: Invalid argument!<br>
> [0]PETSC ERROR: Invalid object classid 0<br>
> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
> [0]PETSC ERROR: ------------------------------------------------------------------------<br>
> [0]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
> [2]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
> [2]PETSC ERROR: Invalid argument!<br>
> [2]PETSC ERROR: Invalid object classid 0<br>
> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
> [2]PETSC ERROR: ------------------------------------------------------------------------<br>
> [2]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
> [2]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
> [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
> [2]PETSC ERROR: See docs/index.html for manual pages.<br>
> [2]PETSC ERROR: ------------------------------------------------------------------------<br>
> [2]PETSC ERROR: ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:22:29 2013<br>
> [2]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
> [2]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
> [2]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
> [2]PETSC ERROR: [0]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
> [0]PETSC ERROR: See docs/index.html for manual pages.<br>
> [0]PETSC ERROR: ------------------------------------------------------------------------<br>
> [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
> [1]PETSC ERROR: Invalid argument!<br>
> [1]PETSC ERROR: Invalid object classid 0<br>
> This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
> [1]PETSC ERROR: ------------------------------------------------------------------------<br>
> [1]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
> [1]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
> [1]PETSC ERROR: See docs/index.html for manual pages.<br>
> [1]PETSC ERROR: ------------------------------------------------------------------------<br>
> [2]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> [2]PETSC ERROR: PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:22:29 2013<br>
> [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
> [0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
> [0]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
> [0]PETSC ERROR: ------------------------------------------------------------------------<br>
> ------------------------------------------------------------------------<br>
> [1]PETSC ERROR: ./ex109 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:22:29 2013<br>
> [1]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
> [1]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
> [1]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
> [1]PETSC ERROR: ------------------------------------------------------------------------<br>
> [2]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
> [2]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [2]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [2]PETSC ERROR: [0]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> [0]PETSC ERROR: [1]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> [1]PETSC ERROR: PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> MatMatMult() line 8757 in /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c<br>
> [2]PETSC ERROR: main() line 62 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c<br>
> PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
> [0]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
> [0]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [1]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
> [1]PETSC ERROR: MatMatMultSymbolic_MPIAIJ_MPIDense() line 422 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [0]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [0]PETSC ERROR: MatMatMult() line 8757 in /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: main() line 62 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c<br>
> [1]PETSC ERROR: MatMatMult_MPIAIJ_MPIDense() line 359 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c<br>
> [1]PETSC ERROR: MatMatMult() line 8757 in /Users/barrysmith/Src/petsc/src/mat/interface/matrix.c<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2<br>
> [cli_2]: aborting job:<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
> [1]PETSC ERROR: main() line 62 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex109.c<br>
> [cli_0]: aborting job:<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1<br>
> [cli_1]: aborting job:<br>
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1<br>
><br>
> ===================================================================================<br>
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES<br>
> = EXIT CODE: 1<br>
> = CLEANING UP REMAINING PROCESSES<br>
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES<br>
> ===================================================================================<br>
/Users/barrysmith/Src/petsc/src/mat/examples/tests<br>
Possible problem with ex109_2, diffs above<br>
<br>
Number 2<br>
<br>
6a7,9<br>
> WARNING! There are options you set that were not used!<br>
> WARNING! could be spelling mistake, etc!<br>
> Option left: name:-psubcomm_type value: interlaced<br>
/Users/barrysmith/Src/petsc/src/ksp/ksp/examples/tutorials<br>
Possible problem with with ex5_redundant_4, diffs above<br>
<br>
<br>
Number 3<br>
<br>
=========================================<br>
5c5,236<br>
< Nonlinear solve did not converge due to DIVERGED_LINE_SEARCH iterations 0<br>
---<br>
> 1 SNES VI Function norm 8.163372808705e-02 Active lower constraints 7053/7235 upper constraints 0/0 Percent of total 0.749601 Percent of bounded 0<br>
> 0 KSP Residual norm 2.673<br>
> 1 KSP Residual norm 0.000724555<br>
> 2 KSP Residual norm 2.04155e-05<br>
> 2 SNES VI Function norm 7.069074423947e-02 Active lower constraints 6867/7053 upper constraints 0/0 Percent of total 0.729833 Percent of bounded 0<br>
> 0 KSP Residual norm 2.6202<br>
> 1 KSP Residual norm 0.000660539<br>
> 2 KSP Residual norm 2.24854e-05<br>
> 3 SNES VI Function norm 6.507423547610e-02 Active lower constraints 6677/6867 upper constraints 0/0 Percent of total 0.70964 Percent of bounded 0<br>
> 0 KSP Residual norm 2.66047<br>
> 1 KSP Residual norm 0.000737759<br>
> 2 KSP Residual norm 1.94446e-05<br>
> 4 SNES VI Function norm 6.003760298551e-02 Active lower constraints 6487/6677 upper constraints 0/0 Percent of total 0.689446 Percent of bounded 0<br>
> 0 KSP Residual norm 2.57967<br>
> 1 KSP Residual norm 0.000687075<br>
> 2 KSP Residual norm 1.86555e-05<br>
> 5 SNES VI Function norm 5.546429354259e-02 Active lower constraints 6297/6487 upper constraints 0/0 Percent of total 0.669253 Percent of bounded 0<br>
> 0 KSP Residual norm 2.38229<br>
> 1 KSP Residual norm 0.000797866<br>
> 2 KSP Residual norm 2.02051e-05<br>
> 6 SNES VI Function norm 5.127650993748e-02 Active lower constraints 6107/6297 upper constraints 0/0 Percent of total 0.649059 Percent of bounded 0<br>
> 0 KSP Residual norm 2.13299<br>
> 1 KSP Residual norm 0.000868182<br>
> 2 KSP Residual norm 2.05078e-05<br>
> 7 SNES VI Function norm 4.743647017375e-02 Active lower constraints 5917/6107 upper constraints 0/0 Percent of total 0.628866 Percent of bounded 0<br>
> 0 KSP Residual norm 1.91998<br>
> 1 KSP Residual norm 0.000940245<br>
> 2 KSP Residual norm 2.11283e-05<br>
> 3 KSP Residual norm 4.4243e-07<br>
> 8 SNES VI Function norm 4.393250901762e-02 Active lower constraints 5723/5917 upper constraints 0/0 Percent of total 0.608247 Percent of bounded 0<br>
> 0 KSP Residual norm 1.78644<br>
> 1 KSP Residual norm 0.000937063<br>
> 2 KSP Residual norm 1.98631e-05<br>
> 3 KSP Residual norm 4.2512e-07<br>
> 9 SNES VI Function norm 4.074814326708e-02 Active lower constraints 5533/5723 upper constraints 0/0 Percent of total 0.588054 Percent of bounded 0<br>
> 0 KSP Residual norm 1.71837<br>
> 1 KSP Residual norm 0.000896483<br>
> 2 KSP Residual norm 2.00187e-05<br>
> 3 KSP Residual norm 4.43605e-07<br>
> 10 SNES VI Function norm 3.743247300660e-02 Active lower constraints 5343/5533 upper constraints 0/0 Percent of total 0.567861 Percent of bounded 0<br>
> 0 KSP Residual norm 1.59926<br>
> 1 KSP Residual norm 0.000803251<br>
> 2 KSP Residual norm 1.83603e-05<br>
> 3 KSP Residual norm 4.14208e-07<br>
> 11 SNES VI Function norm 3.486905663353e-02 Active lower constraints 5153/5343 upper constraints 0/0 Percent of total 0.547667 Percent of bounded 0<br>
> 0 KSP Residual norm 1.44285<br>
> 1 KSP Residual norm 0.00065968<br>
> 2 KSP Residual norm 1.73149e-05<br>
> 3 KSP Residual norm 4.06698e-07<br>
> 12 SNES VI Function norm 3.302767841301e-02 Active lower constraints 4963/5153 upper constraints 0/0 Percent of total 0.527474 Percent of bounded 0<br>
> 0 KSP Residual norm 1.31481<br>
> 1 KSP Residual norm 0.000539611<br>
> 2 KSP Residual norm 1.4902e-05<br>
> 3 KSP Residual norm 3.53455e-07<br>
> 13 SNES VI Function norm 3.145463312751e-02 Active lower constraints 4773/4963 upper constraints 0/0 Percent of total 0.50728 Percent of bounded 0<br>
> 0 KSP Residual norm 1.21457<br>
> 1 KSP Residual norm 0.00045629<br>
> 2 KSP Residual norm 1.33211e-05<br>
> 3 KSP Residual norm 3.04759e-07<br>
> 14 SNES VI Function norm 3.004175705452e-02 Active lower constraints 4583/4773 upper constraints 0/0 Percent of total 0.487087 Percent of bounded 0<br>
> 0 KSP Residual norm 1.13291<br>
> 1 KSP Residual norm 0.000395063<br>
> 2 KSP Residual norm 1.15424e-05<br>
> 3 KSP Residual norm 2.60715e-07<br>
> 15 SNES VI Function norm 2.876325782774e-02 Active lower constraints 4393/4583 upper constraints 0/0 Percent of total 0.466893 Percent of bounded 0<br>
> 0 KSP Residual norm 1.06417<br>
> 1 KSP Residual norm 0.000364522<br>
> 2 KSP Residual norm 1.04747e-05<br>
> 16 SNES VI Function norm 2.760470906290e-02 Active lower constraints 4203/4393 upper constraints 0/0 Percent of total 0.4467 Percent of bounded 0<br>
> 0 KSP Residual norm 1.00549<br>
> 1 KSP Residual norm 0.000326304<br>
> 2 KSP Residual norm 9.34975e-06<br>
> 17 SNES VI Function norm 2.655295309482e-02 Active lower constraints 4013/4203 upper constraints 0/0 Percent of total 0.426507 Percent of bounded 0<br>
> 0 KSP Residual norm 0.954332<br>
> 1 KSP Residual norm 0.00032105<br>
> 2 KSP Residual norm 9.08764e-06<br>
> 18 SNES VI Function norm 2.559478787217e-02 Active lower constraints 3823/4013 upper constraints 0/0 Percent of total 0.406313 Percent of bounded 0<br>
> 0 KSP Residual norm 0.909227<br>
> 1 KSP Residual norm 0.000291792<br>
> 2 KSP Residual norm 8.23083e-06<br>
> 19 SNES VI Function norm 2.471758098046e-02 Active lower constraints 3633/3823 upper constraints 0/0 Percent of total 0.38612 Percent of bounded 0<br>
> 0 KSP Residual norm 0.868511<br>
> 1 KSP Residual norm 0.000296352<br>
> 2 KSP Residual norm 8.17352e-06<br>
> 20 SNES VI Function norm 2.390947757020e-02 Active lower constraints 3443/3633 upper constraints 0/0 Percent of total 0.365926 Percent of bounded 0<br>
> 0 KSP Residual norm 0.831379<br>
> 1 KSP Residual norm 0.000268578<br>
> 2 KSP Residual norm 7.42438e-06<br>
> 21 SNES VI Function norm 2.315991829418e-02 Active lower constraints 3253/3443 upper constraints 0/0 Percent of total 0.345733 Percent of bounded 0<br>
> 0 KSP Residual norm 0.796738<br>
> 1 KSP Residual norm 0.000276534<br>
> 2 KSP Residual norm 7.76815e-06<br>
> 22 SNES VI Function norm 2.245961364043e-02 Active lower constraints 3063/3253 upper constraints 0/0 Percent of total 0.325539 Percent of bounded 0<br>
> 0 KSP Residual norm 0.764265<br>
> 1 KSP Residual norm 0.000253254<br>
> 2 KSP Residual norm 7.1178e-06<br>
> 23 SNES VI Function norm 2.180076317077e-02 Active lower constraints 2873/3063 upper constraints 0/0 Percent of total 0.305346 Percent of bounded 0<br>
> 0 KSP Residual norm 0.733311<br>
> 1 KSP Residual norm 0.000262892<br>
> 2 KSP Residual norm 7.42148e-06<br>
> 3 KSP Residual norm 1.70668e-07<br>
> 24 SNES VI Function norm 2.117696491418e-02 Active lower constraints 2683/2873 upper constraints 0/0 Percent of total 0.285153 Percent of bounded 0<br>
> 0 KSP Residual norm 0.70386<br>
> 1 KSP Residual norm 0.000238463<br>
> 2 KSP Residual norm 6.68442e-06<br>
> 25 SNES VI Function norm 2.058276052298e-02 Active lower constraints 2493/2683 upper constraints 0/0 Percent of total 0.264959 Percent of bounded 0<br>
> 0 KSP Residual norm 0.675486<br>
> 1 KSP Residual norm 0.00024684<br>
> 2 KSP Residual norm 7.06239e-06<br>
> 3 KSP Residual norm 1.58775e-07<br>
> 26 SNES VI Function norm 2.001420296231e-02 Active lower constraints 2303/2493 upper constraints 0/0 Percent of total 0.244766 Percent of bounded 0<br>
> 0 KSP Residual norm 0.648322<br>
> 1 KSP Residual norm 0.000225464<br>
> 2 KSP Residual norm 6.39276e-06<br>
> 27 SNES VI Function norm 1.946781277069e-02 Active lower constraints 2113/2303 upper constraints 0/0 Percent of total 0.224572 Percent of bounded 0<br>
> 0 KSP Residual norm 0.622075<br>
> 1 KSP Residual norm 0.000234544<br>
> 2 KSP Residual norm 6.71028e-06<br>
> 3 KSP Residual norm 1.51711e-07<br>
> 28 SNES VI Function norm 1.894178583580e-02 Active lower constraints 1924/2113 upper constraints 0/0 Percent of total 0.204485 Percent of bounded 0<br>
> 0 KSP Residual norm 0.597384<br>
> 1 KSP Residual norm 0.000212332<br>
> 2 KSP Residual norm 5.95889e-06<br>
> 29 SNES VI Function norm 1.852853457419e-02 Active lower constraints 1750/1924 upper constraints 0/0 Percent of total 0.185992 Percent of bounded 0<br>
> 0 KSP Residual norm 0.706391<br>
> 1 KSP Residual norm 0.000567236<br>
> 2 KSP Residual norm 8.53675e-06<br>
> 3 KSP Residual norm 1.60829e-07<br>
> 30 SNES VI Function norm 1.754837946520e-02 Active lower constraints 1598/1750 upper constraints 0/0 Percent of total 0.169837 Percent of bounded 0<br>
> 0 KSP Residual norm 0.93473<br>
> 1 KSP Residual norm 0.000481758<br>
> 2 KSP Residual norm 8.20428e-06<br>
> 31 SNES VI Function norm 1.676862871820e-02 Active lower constraints 1460/1598 upper constraints 0/0 Percent of total 0.155171 Percent of bounded 0<br>
> 0 KSP Residual norm 1.13488<br>
> 1 KSP Residual norm 0.000316588<br>
> 2 KSP Residual norm 6.62252e-06<br>
> 32 SNES VI Function norm 1.610357401507e-02 Active lower constraints 1332/1460 upper constraints 0/0 Percent of total 0.141567 Percent of bounded 0<br>
> 0 KSP Residual norm 1.27503<br>
> 1 KSP Residual norm 0.000313101<br>
> 2 KSP Residual norm 6.45637e-06<br>
> 33 SNES VI Function norm 1.554556364768e-02 Active lower constraints 1212/1332 upper constraints 0/0 Percent of total 0.128813 Percent of bounded 0<br>
> 0 KSP Residual norm 1.40972<br>
> 1 KSP Residual norm 0.000346546<br>
> 2 KSP Residual norm 7.29221e-06<br>
> 34 SNES VI Function norm 1.507695156052e-02 Active lower constraints 1100/1212 upper constraints 0/0 Percent of total 0.116909 Percent of bounded 0<br>
> 0 KSP Residual norm 1.53275<br>
> 1 KSP Residual norm 0.000344641<br>
> 2 KSP Residual norm 7.28721e-06<br>
> 35 SNES VI Function norm 1.467826646114e-02 Active lower constraints 996/1100 upper constraints 0/0 Percent of total 0.105856 Percent of bounded 0<br>
> 0 KSP Residual norm 1.63198<br>
> 1 KSP Residual norm 0.000482515<br>
> 2 KSP Residual norm 1.11168e-05<br>
> 36 SNES VI Function norm 1.430075725264e-02 Active lower constraints 898/996 upper constraints 0/0 Percent of total 0.0954405 Percent of bounded 0<br>
> 0 KSP Residual norm 1.66151<br>
> 1 KSP Residual norm 0.000497655<br>
> 2 KSP Residual norm 9.82952e-06<br>
> 37 SNES VI Function norm 1.403299540129e-02 Active lower constraints 806/898 upper constraints 0/0 Percent of total 0.0856627 Percent of bounded 0<br>
> 0 KSP Residual norm 1.7498<br>
> 1 KSP Residual norm 0.000465018<br>
> 2 KSP Residual norm 8.49882e-06<br>
> 38 SNES VI Function norm 1.379741365424e-02 Active lower constraints 722/806 upper constraints 0/0 Percent of total 0.076735 Percent of bounded 0<br>
> 0 KSP Residual norm 1.80458<br>
> 1 KSP Residual norm 0.000350758<br>
> 2 KSP Residual norm 7.49574e-06<br>
> 39 SNES VI Function norm 1.353352027815e-02 Active lower constraints 644/722 upper constraints 0/0 Percent of total 0.0684451 Percent of bounded 0<br>
> 0 KSP Residual norm 1.78002<br>
> 1 KSP Residual norm 0.000343092<br>
> 2 KSP Residual norm 6.2395e-06<br>
> 40 SNES VI Function norm 1.335390303582e-02 Active lower constraints 572/644 upper constraints 0/0 Percent of total 0.0607929 Percent of bounded 0<br>
> 0 KSP Residual norm 1.80355<br>
> 1 KSP Residual norm 0.000489046<br>
> 2 KSP Residual norm 1.05897e-05<br>
> 41 SNES VI Function norm 1.311312785191e-02 Active lower constraints 506/572 upper constraints 0/0 Percent of total 0.0537783 Percent of bounded 0<br>
> 0 KSP Residual norm 1.74734<br>
> 1 KSP Residual norm 0.000502745<br>
> 2 KSP Residual norm 8.79623e-06<br>
> 42 SNES VI Function norm 1.294474697542e-02 Active lower constraints 446/506 upper constraints 0/0 Percent of total 0.0474014 Percent of bounded 0<br>
> 0 KSP Residual norm 1.73656<br>
> 1 KSP Residual norm 0.000331689<br>
> 2 KSP Residual norm 6.99813e-06<br>
> 43 SNES VI Function norm 1.266967930579e-02 Active lower constraints 392/446 upper constraints 0/0 Percent of total 0.0416622 Percent of bounded 0<br>
> 0 KSP Residual norm 1.64508<br>
> 1 KSP Residual norm 0.00041459<br>
> 2 KSP Residual norm 8.87392e-06<br>
> 44 SNES VI Function norm 1.240587913199e-02 Active lower constraints 342/392 upper constraints 0/0 Percent of total 0.0363482 Percent of bounded 0<br>
> 0 KSP Residual norm 1.5587<br>
> 1 KSP Residual norm 0.00049759<br>
> 2 KSP Residual norm 8.2924e-06<br>
> 45 SNES VI Function norm 1.221158994513e-02 Active lower constraints 298/342 upper constraints 0/0 Percent of total 0.0316718 Percent of bounded 0<br>
> 0 KSP Residual norm 1.51519<br>
> 1 KSP Residual norm 0.000295973<br>
> 2 KSP Residual norm 6.4029e-06<br>
> 46 SNES VI Function norm 1.184530415480e-02 Active lower constraints 260/298 upper constraints 0/0 Percent of total 0.0276331 Percent of bounded 0<br>
> 0 KSP Residual norm 1.39666<br>
> 1 KSP Residual norm 0.000400468<br>
> 2 KSP Residual norm 8.17936e-06<br>
> 47 SNES VI Function norm 1.147776854528e-02 Active lower constraints 226/260 upper constraints 0/0 Percent of total 0.0240196 Percent of bounded 0<br>
> 0 KSP Residual norm 1.28758<br>
> 1 KSP Residual norm 0.000516693<br>
> 2 KSP Residual norm 8.76133e-06<br>
> 48 SNES VI Function norm 1.128662875695e-02 Active lower constraints 206/226 upper constraints 0/0 Percent of total 0.0218939 Percent of bounded 0<br>
> 0 KSP Residual norm 1.34679<br>
> 1 KSP Residual norm 0.00018716<br>
> 2 KSP Residual norm 4.46394e-06<br>
> 49 SNES VI Function norm 1.023414773727e-02 Active lower constraints 200/206 upper constraints 0/0 Percent of total 0.0212562 Percent of bounded 0<br>
> 0 KSP Residual norm 0.733538<br>
> 1 KSP Residual norm 5.3784e-05<br>
> 2 KSP Residual norm 1.92659e-06<br>
> 50 SNES VI Function norm 7.901146653181e-03 Active lower constraints 198/200 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded 0<br>
> 0 KSP Residual norm 0.386062<br>
> 1 KSP Residual norm 0.000108925<br>
> 2 KSP Residual norm 2.31172e-06<br>
> 51 SNES VI Function norm 2.512634762203e-04 Active lower constraints 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded 0<br>
> 0 KSP Residual norm 0.00408659<br>
> 1 KSP Residual norm 2.92958e-05<br>
> 2 KSP Residual norm 1.02766e-06<br>
> 3 KSP Residual norm 5.54081e-08<br>
> 4 KSP Residual norm 1.7915e-09<br>
> 52 SNES VI Function norm 9.542675696205e-07 Active lower constraints 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded 0<br>
> 0 KSP Residual norm 3.21206e-06<br>
> 1 KSP Residual norm 5.05625e-08<br>
> 2 KSP Residual norm 1.99096e-09<br>
> 3 KSP Residual norm 5.646e-11<br>
> 4 KSP Residual norm < 1.e-11<br>
> 53 SNES VI Function norm 8.424849253004e-12 Active lower constraints 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded 0<br>
> 0 KSP Residual norm 1.852e-11<br>
> 1 KSP Residual norm < 1.e-11<br>
> 2 KSP Residual norm < 1.e-11<br>
> 3 KSP Residual norm < 1.e-11<br>
> 4 KSP Residual norm < 1.e-11<br>
> 54 SNES VI Function norm 2.608107436444e-15 Active lower constraints 198/198 upper constraints 0/0 Percent of total 0.0210437 Percent of bounded 0<br>
> Nonlinear solve converged due to CONVERGED_FNORM_RELATIVE iterations 54<br>
/Users/barrysmith/Src/petsc/src/snes/examples/tutorials<br>
Possible problem with ex58_1, diffs above<br>
=========================================<br>
<br>
Number 4<br>
<br>
=========================================<br>
[0]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
[0]PETSC ERROR: Invalid argument!<br>
[0]PETSC ERROR: Invalid object classid 0<br>
This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
[0]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[0]PETSC ERROR: See docs/index.html for manual pages.<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:46:31 2013<br>
[1]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
[1]PETSC ERROR: Invalid argument!<br>
[1]PETSC ERROR: Invalid object classid 0<br>
This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
[1]PETSC ERROR: ------------------------------------------------------------------------<br>
[1]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
[1]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[1]PETSC ERROR: See docs/index.html for manual pages.<br>
[1]PETSC ERROR: ------------------------------------------------------------------------<br>
[1]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:46:31 2013<br>
[1]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
[1]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
[1]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
[1]PETSC ERROR: ------------------------------------------------------------------------<br>
[1]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[1]PETSC ERROR: PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[1]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
[1]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[2]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
[2]PETSC ERROR: Invalid argument!<br>
[2]PETSC ERROR: Invalid object classid 0<br>
This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but link with static libraries.!<br>
[2]PETSC ERROR: ------------------------------------------------------------------------<br>
[2]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
[2]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[2]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[2]PETSC ERROR: See docs/index.html for manual pages.<br>
[2]PETSC ERROR: ------------------------------------------------------------------------<br>
[2]PETSC ERROR: ./ex95 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:46:31 2013<br>
[2]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
[2]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
[2]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
[2]PETSC ERROR: ------------------------------------------------------------------------<br>
[2]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[2]PETSC ERROR: PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[2]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
[2]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[2]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[2]PETSC ERROR: main() line 41 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c<br>
[0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
[0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
[0]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: PetscClassRegLogGetClass() line 290 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[0]PETSC ERROR: PetscLogObjCreateDefault() line 317 in /Users/barrysmith/Src/petsc/src/sys/logging/utils/classlog.c<br>
[0]PETSC ERROR: PetscContainerCreate() line 1018 in /Users/barrysmith/Src/petsc/src/sys/objects/inherit.c<br>
[1]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[1]PETSC ERROR: main() line 41 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c<br>
[0]PETSC ERROR: MatCreateMPIAIJSumSeqAIJSymbolic() line 5043 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[0]PETSC ERROR: MatCreateMPIAIJSumSeqAIJ() line 5097 in /Users/barrysmith/Src/petsc/src/mat/impls/aij/mpi/mpiaij.c<br>
[0]PETSC ERROR: main() line 41 in /Users/barrysmith/Src/petsc/src/mat/examples/tests/ex95.c<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2<br>
[cli_2]: aborting job:<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
[cli_0]: aborting job:<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
[cli_1]: aborting job:<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1<br>
1,31c1,7<br>
< type: mpiaij<br>
< row 0: (0, 0.001) (1, 0.002) (2, 0.003)<br>
< row 1: (1, 0.001) (2, 0.002) (3, 0.003)<br>
< row 2: (2, 0.001) (3, 0.002) (4, 0.003)<br>
< row 3: (3, 0.001) (4, 0.002) (5, 0.003)<br>
< row 4: (4, 0.001) (5, 0.002) (6, 0.003)<br>
< row 5: (5, 0.001) (6, 0.002) (7, 0.003)<br>
< row 6: (6, 0.001) (7, 0.002) (8, 0.003)<br>
< row 7: (7, 0.001) (8, 0.002) (9, 0.003)<br>
< row 8: (8, 0.001) (9, 0.002) (10, 0.003)<br>
< row 9: (9, 0.001) (10, 0.002) (11, 0.003)<br>
< row 10: (10, 0.001) (11, 0.002) (12, 0.003)<br>
< row 11: (11, 0.001) (12, 0.002) (13, 0.003)<br>
< row 12: (12, 0.001) (13, 0.002) (14, 0.003)<br>
< row 13: (13, 0.001) (14, 0.002) (15, 0.003)<br>
< row 14: (14, 0.001) (15, 0.002) (16, 0.003)<br>
< row 15: (15, 0.001) (16, 0.002) (17, 0.003)<br>
< row 16: (16, 0.001) (17, 0.002) (18, 0.003)<br>
< row 17: (17, 0.001) (18, 0.002) (19, 0.003)<br>
< row 18: (18, 0.001) (19, 0.002) (20, 0.003)<br>
< row 19: (19, 0.001) (20, 0.002) (21, 0.003)<br>
< row 20: (20, 0.001) (21, 0.002) (22, 0.003)<br>
< row 21: (21, 0.001) (22, 0.002) (23, 0.003)<br>
< row 22: (22, 0.001) (23, 0.002) (24, 0.003)<br>
< row 23: (23, 0.001) (24, 0.002) (25, 0.003)<br>
< row 24: (24, 0.001) (25, 0.002) (26, 0.003)<br>
< row 25: (25, 0.001) (26, 0.002) (27, 0.003)<br>
< row 26: (26, 0.001) (27, 0.002) (28, 0.003)<br>
< row 27: (27, 0.001) (28, 0.002) (29, 0.003)<br>
< row 28: (28, 0.001) (29, 0.002)<br>
< row 29: (29, 0.001)<br>
---<br>
><br>
> ===================================================================================<br>
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES<br>
> = EXIT CODE: 1<br>
> = CLEANING UP REMAINING PROCESSES<br>
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES<br>
> ===================================================================================<br>
/Users/barrysmith/Src/petsc/src/mat/examples/tests<br>
Possible problem with ex95_1, diffs above<br>
<br>
Number 5<br>
<br>
=========================================<br>
lid velocity = 0.0204082, prandtl # = 1, grashof # = 1<br>
[0]PETSC ERROR: --------------------- Error Message ------------------------------------<br>
[0]PETSC ERROR: Object is in wrong state!<br>
[0]PETSC ERROR: You called KSPSetDM() but did not use DMKSPSetComputeOperators() or KSPSetDMActive(dm,PETSC_FALSE);!<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: Petsc Development GIT revision: 7e25b1146419e21f31771dc7c7d2123890048716 GIT Date: 2013-09-08 16:24:36 -0500<br>
[0]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[0]PETSC ERROR: See docs/index.html for manual pages.<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: ./ex19 on a arch-gcc named Barrys-MacBook-Pro.local by barrysmith Sun Sep 8 17:46:52 2013<br>
[0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc/arch-gcc/lib<br>
[0]PETSC ERROR: Configure run at Sun Sep 8 16:57:37 2013<br>
[0]PETSC ERROR: Configure options --download-hypre --download-metis --download-mpich --download-parmetis --download-superlu --download-superlu_dist --with-pthreadclasses PETSC_ARCH=arch-gcc<br>
[0]PETSC ERROR: ------------------------------------------------------------------------<br>
[0]PETSC ERROR: KSPSetUp() line 230 in /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c<br>
[0]PETSC ERROR: PCSetUp_MG() line 776 in /Users/barrysmith/Src/petsc/src/ksp/pc/impls/mg/mg.c<br>
[0]PETSC ERROR: PCSetUp() line 888 in /Users/barrysmith/Src/petsc/src/ksp/pc/interface/precon.c<br>
[0]PETSC ERROR: KSPSetUp() line 278 in /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c<br>
[0]PETSC ERROR: KSPSolve() line 399 in /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c<br>
[0]PETSC ERROR: PCApply_FieldSplit() line 877 in /Users/barrysmith/Src/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c<br>
[0]PETSC ERROR: PCApply() line 440 in /Users/barrysmith/Src/petsc/src/ksp/pc/interface/precon.c<br>
[0]PETSC ERROR: KSP_PCApply() line 227 in /Users/barrysmith/Src/petsc/include/petsc-private/kspimpl.h<br>
[0]PETSC ERROR: KSPInitialResidual() line 64 in /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itres.c<br>
[0]PETSC ERROR: KSPSolve_GMRES() line 239 in /Users/barrysmith/Src/petsc/src/ksp/ksp/impls/gmres/gmres.c<br>
[0]PETSC ERROR: KSPSolve() line 441 in /Users/barrysmith/Src/petsc/src/ksp/ksp/interface/itfunc.c<br>
[0]PETSC ERROR: SNESSolve_NEWTONLS() line 233 in /Users/barrysmith/Src/petsc/src/snes/impls/ls/ls.c<br>
[0]PETSC ERROR: SNESSolve() line 3787 in /Users/barrysmith/Src/petsc/src/snes/interface/snes.c<br>
[0]PETSC ERROR: main() line 160 in /Users/barrysmith/Src/petsc/src/snes/examples/tutorials/ex19.c<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
[cli_0]: aborting job:<br>
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
<br>
===================================================================================<br>
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES<br>
= EXIT CODE: 1<br>
= CLEANING UP REMAINING PROCESSES<br>
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES<br>
===================================================================================<br>
make[6]: [runex19_draw] Error 1 (ignored)<br>
******* Testing: testexamples_Fortran *******<br>
<br>
<br>
<br>
<br>
</blockquote></div><br></div>
</div></div></blockquote></div></div></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</font></span></div></div>
</blockquote></div><br></div></div>