[petsc-dev] Reminder: every symbol with extern linkage must be namespaced

Sat Mar 17 13:16:43 CDT 2012

I have fixed the logging variables and a few others. The following
incantation will show you a list of the symbols that are not currently in a
"claimed" namespace (either directly or through bundling). These are
arguably already too promiscuous, but the symbols that this does not filter
out should probably be fixed.

$ nm --print-file-name mpich-static/lib/libpetsc.a |sort -k 3 | grep '
\(B\|D\|C\|T\) ' | grep -i -v '
\(XXT\|XYT\|Xi\|TetGen\|Vec\|Mat\|Petsc\|KSP\|PC\|SNES\|DM\|TS\|PF\|IS\|AO\|Characteristic\|ClassPerf\|EventPerfLog\|EventRegLog\|spbas_\|f90array\|mpifcmb\|SPARSEPACK\|MPIU_\|MINPACK\|admf_\)'

mpich-static/lib/libpetsc.a:dadestroy.c.o:0000000000000004 C ADDA_CLASSID
mpich-static/lib/libpetsc.a:adda.c.o:000000000000264a T ADDAHCiter
mpich-static/lib/libpetsc.a:adda.c.o:0000000000002584 T ADDAHCiterStartup
mpich-static/lib/libpetsc.a:asa.c.o:0000000000000000 B asa_events_registered
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:0000000000014e15 T
BackwardSolve_SeqSBAIJ_2_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:0000000000012a64 T
BackwardSolve_SeqSBAIJ_3_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000001021c T
BackwardSolve_SeqSBAIJ_4_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000000d47e T
BackwardSolve_SeqSBAIJ_5_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:0000000000009e90 T
BackwardSolve_SeqSBAIJ_6_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:0000000000006082 T
BackwardSolve_SeqSBAIJ_7_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:00000000000021a5 T
BackwardSolve_SeqSBAIJ_N_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbstrmfact.c.o:0000000000001fe8 T
BackwardSolve_SeqSBSTRM_4_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbstrmfact.c.o:0000000000005262 T
BackwardSolve_SeqSBSTRM_5_NaturalOrdering_private
mpich-static/lib/libpetsc.a:iga.c.o:000000000000a2d6 T BDCreate
mpich-static/lib/libpetsc.a:iga.c.o:000000000000a70a T BDDestroy
mpich-static/lib/libpetsc.a:iga.c.o:000000000000acca T BDGetBasis
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b9aa T BDGetBasisOffset
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b60e T BDGetGaussPt
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b7dc T BDGetGaussWt
mpich-static/lib/libpetsc.a:iga.c.o:000000000000aebb T BDSetBasis
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b442 T BDSetBasisOffset
mpich-static/lib/libpetsc.a:iga.c.o:000000000000bb7a T BDSetElementOwnership
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b0aa T BDSetGaussPt
mpich-static/lib/libpetsc.a:iga.c.o:000000000000b276 T BDSetGaussWt
mpich-static/lib/libpetsc.a:baijfact.c.o:0000000000010c6e T BlockAbs_private
mpich-static/lib/libpetsc.a:init.c.o:0000000000000009 D _BT_c
mpich-static/lib/libpetsc.a:init.c.o:0000000000000020 B _BT_idx
mpich-static/lib/libpetsc.a:init.c.o:0000000000000008 D _BT_mask
mpich-static/lib/libpetsc.a:dl.c.o:0000000000000000 B CCAList
mpich-static/lib/libpetsc.a:iga.c.o:000000000000f485 T CheckKnots
mpich-static/lib/libpetsc.a:zsys.c.o:000000000000009b T chkmemfortran_
mpich-static/lib/libpetsc.a:iga.c.o:000000000000be0e T
Compute1DBasisFunctions
mpich-static/lib/libpetsc.a:snesncg.c.o:0000000000001823 T
ComputeYtJtF_Private
mpich-static/lib/libpetsc.a:mpiaij.c.o:0000000000005958 T
CreateColmap_MPIAIJ_Private
mpich-static/lib/libpetsc.a:mpibaij.c.o:00000000000028f5 T
CreateColmap_MPIBAIJ_Private
mpich-static/lib/libpetsc.a:iga.c.o:000000000000ea19 T CreateKnotVector
mpich-static/lib/libpetsc.a:iga.c.o:000000000000ef82 T
CreateKnotVectorFromMesh
mpich-static/lib/libpetsc.a:gamg.c.o:0000000000000926 T createLevel
mpich-static/lib/libpetsc.a:iga.c.o:000000000000eca3 T
CreatePeriodicKnotVector
mpich-static/lib/libpetsc.a:tools.c.o:0000000000000629 T createSimpleGraph
mpich-static/lib/libpetsc.a:iga.c.o:000000000000f1e2 T
CreateTaperSetOfPoints
mpich-static/lib/libpetsc.a:dgmres.c.o:0000000000001f14 T DGMREScycle
mpich-static/lib/libpetsc.a:snesnoise.c.o:0000000000000a1a T
DiffParameterCompute_More
mpich-static/lib/libpetsc.a:snesnoise.c.o:00000000000000bb T
DiffParameterCreate_More
mpich-static/lib/libpetsc.a:snesnoise.c.o:0000000000000722 T
DiffParameterDestroy_More
mpich-static/lib/libpetsc.a:mmaij.c.o:00000000000022a5 T DisAssemble_MPIAIJ
mpich-static/lib/libpetsc.a:mmbaij.c.o:00000000000020b3 T
DisAssemble_MPIBAIJ
mpich-static/lib/libpetsc.a:mmsbaij.c.o:0000000000004083 T
DisAssemble_MPISBAIJ
mpich-static/lib/libpetsc.a:reg.c.o:0000000000000000 B DLLibrariesLoaded
mpich-static/lib/libpetsc.a:pthread.c.o:00000000000004c5 T DoCoreAffinity
mpich-static/lib/libpetsc.a:axisc.c.o:0000000000000000 B DRAWAXIS_CLASSID
mpich-static/lib/libpetsc.a:hists.c.o:0000000000000000 B DRAWHG_CLASSID
mpich-static/lib/libpetsc.a:lgc.c.o:0000000000000000 B DRAWLG_CLASSID
mpich-static/lib/libpetsc.a:dscatter.c.o:0000000000000000 B DRAWSP_CLASSID
mpich-static/lib/libpetsc.a:eventLog.c.o:0000000000001891 T
EventPerfInfoClear
mpich-static/lib/libpetsc.a:eventLog.c.o:0000000000001aa2 T
EventPerfInfoCopy
mpich-static/lib/libpetsc.a:fas.c.o:0000000000008733 T FASCoarseCorrection
mpich-static/lib/libpetsc.a:fas.c.o:0000000000008e88 T FASCycle_Additive
mpich-static/lib/libpetsc.a:fas.c.o:0000000000009ae5 T
FASCycle_Multiplicative
mpich-static/lib/libpetsc.a:fas.c.o:0000000000006d6e T FASDownSmooth
mpich-static/lib/libpetsc.a:fas.c.o:000000000000753a T FASUpSmooth
mpich-static/lib/libpetsc.a:fgmres.c.o:0000000000000a9f T FGMREScycle
mpich-static/lib/libpetsc.a:iga.c.o:000000000000c943 T FindSpan
mpich-static/lib/libpetsc.a:agg.c.o:00000000000054c6 T formProl0
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:00000000000149c9 T
ForwardSolve_SeqSBAIJ_2_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:00000000000124d2 T
ForwardSolve_SeqSBAIJ_3_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000000fb84 T
ForwardSolve_SeqSBAIJ_4_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000000cb6d T
ForwardSolve_SeqSBAIJ_5_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000000936d T
ForwardSolve_SeqSBAIJ_6_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:000000000000522a T
ForwardSolve_SeqSBAIJ_7_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbaijfact2.c.o:0000000000001c1d T
ForwardSolve_SeqSBAIJ_N_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbstrmfact.c.o:0000000000001973 T
ForwardSolve_SeqSBSTRM_4_NaturalOrdering_private
mpich-static/lib/libpetsc.a:sbstrmfact.c.o:00000000000049a3 T
ForwardSolve_SeqSBSTRM_5_NaturalOrdering_private
mpich-static/lib/libpetsc.a:pthread.c.o:0000000000000232 T FuncFinish
mpich-static/lib/libpetsc.a:lockfree.c.o:0000000000000232 T
FuncFinish_LockFree
mpich-static/lib/libpetsc.a:gamg.c.o:0000000000000050 C gamg_setup_events
mpich-static/lib/libpetsc.a:geo.c.o:0000000000000629 T geo_mg_compare
mpich-static/lib/libpetsc.a:tools.c.o:00000000000028fe T getDataWithGhosts
mpich-static/lib/libpetsc.a:iga.c.o:000000000000c9d8 T GetDersBasisFuns
mpich-static/lib/libpetsc.a:geo.c.o:00000000000012f0 T getGIDsOnSquareGraph
mpich-static/lib/libpetsc.a:pinit.c.o:0000000000000000 B __gierr
mpich-static/lib/libpetsc.a:state.c.o:0000000000000000 B globalcurrentstate
mpich-static/lib/libpetsc.a:state.c.o:0000000000000000 D globalmaxstate
mpich-static/lib/libpetsc.a:gmres.c.o:0000000000001196 T GMREScycle
mpich-static/lib/libpetsc.a:xcolor.c.o:0000000000000000 B gNumcolors
mpich-static/lib/libpetsc.a:characteristic.c.o:000000000000a020 T HeapSort
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000cd4 T heavyEdgeMatchAgg
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000c74 T hem_compare
mpich-static/lib/libpetsc.a:complex.c.o:000000000002fecf T
indicesPointFields_private
mpich-static/lib/libpetsc.a:complex.c.o:000000000002fa7d T
indicesPoint_private
mpich-static/lib/libpetsc.a:pthreadpool_chain.c.o:0000000000000040 C
job_chain
mpich-static/lib/libpetsc.a:lockfree.c.o:0000000000000000 B job_lockfree
mpich-static/lib/libpetsc.a:pthreadpool_main.c.o:0000000000000030 C job_main
mpich-static/lib/libpetsc.a:nopool.c.o:0000000000000020 C job_none
mpich-static/lib/libpetsc.a:pthreadpool_tree.c.o:0000000000000040 C job_tree
mpich-static/lib/libpetsc.a:pthreadpool_true.c.o:0000000000000000 B job_true
mpich-static/lib/libpetsc.a:dgefa2.c.o:00000000000015c3 T
Kernel_A_gets_inverse_A_15
mpich-static/lib/libpetsc.a:dgefa2.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_2
mpich-static/lib/libpetsc.a:dgefa3.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_3
mpich-static/lib/libpetsc.a:dgefa4.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_4
mpich-static/lib/libpetsc.a:dgefa5.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_5
mpich-static/lib/libpetsc.a:dgefa6.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_6
mpich-static/lib/libpetsc.a:dgefa7.c.o:0000000000000045 T
Kernel_A_gets_inverse_A_7
mpich-static/lib/libpetsc.a:dgefa2.c.o:00000000000009ed T
Kernel_A_gets_inverse_A_9
mpich-static/lib/libpetsc.a:vecpthread.c.o:0000000000000008 C kerneldatap
mpich-static/lib/libpetsc.a:qn.c.o:0000000000000076 T LBGFSApplyJinv_Private
mpich-static/lib/libpetsc.a:lgmres.c.o:0000000000000e1a T LGMREScycle
mpich-static/lib/libpetsc.a:dgedi.c.o:0000000000000000 T LINPACKdgedi
mpich-static/lib/libpetsc.a:dgefa.c.o:0000000000000045 T LINPACKdgefa
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000b86 T LLNAddDestroy
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000aef T LLNAddID
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000ade T LLNGetID
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000ac2 T LLNSetID
mpich-static/lib/libpetsc.a:pthread.c.o:0000000000000010 B
MainThreadCoreAffinity
mpich-static/lib/libpetsc.a:mis.c.o:000000000000069f T maxIndSetAgg
mpich-static/lib/libpetsc.a:dlregismat.c.o:00000000000001e0 D
MPChacoEigenTypes
mpich-static/lib/libpetsc.a:dlregismat.c.o:0000000000000140 D
MPChacoGlobalTypes
mpich-static/lib/libpetsc.a:dlregismat.c.o:00000000000001a0 D
MPChacoLocalTypes
mpich-static/lib/libpetsc.a:mcrl.c.o:000000000000052b T
MPIAIJCRL_create_aijcrl
mpich-static/lib/libpetsc.a:mpimatmatmult.c.o:00000000000052ff T
MPIAIJ_MPIDenseDestroy
mpich-static/lib/libpetsc.a:mpibstream.c.o:0000000000000076 T
MPIBSTRM_create_bstrm
mpich-static/lib/libpetsc.a:mpilong.c.o:000000000000038f T MPILong_Recv
mpich-static/lib/libpetsc.a:mpilong.c.o:0000000000000054 T MPILong_Send
mpich-static/lib/libpetsc.a:mpisbstream.c.o:0000000000000076 T
MPISBSTRM_create_sbstrm
mpich-static/lib/libpetsc.a:dlregismat.c.o:0000000000000100 D
MPPTScotchStrategyTypes
mpich-static/lib/libpetsc.a:dlregisvec.c.o:000000000000001c C NormIds
mpich-static/lib/libpetsc.a:dlregisvec.c.o:0000000000000000 D NormTypes
mpich-static/lib/libpetsc.a:hem.c.o:000000000000069f T NPCreate
mpich-static/lib/libpetsc.a:hem.c.o:00000000000008ff T NPDestroy
mpich-static/lib/libpetsc.a:hem.c.o:0000000000000798 T NPGetNewNode
mpich-static/lib/libpetsc.a:pthreadpool_true.c.o:0000000000000020 C pbarr
mpich-static/lib/libpetsc.a:vecpthread.c.o:0000000000000008 C pdata
mpich-static/lib/libpetsc.a:plog.c.o:00000000000000b8 B _PetscLogPHC
mpich-static/lib/libpetsc.a:plog.c.o:00000000000000c0 B _PetscLogPHD
mpich-static/lib/libpetsc.a:plog.c.o:00000000000000c8 B _PetscLogPLB
mpich-static/lib/libpetsc.a:plog.c.o:00000000000000d0 B _PetscLogPLE
mpich-static/lib/libpetsc.a:ctetgen.c.o:0000000000005034 T PLCCreate
mpich-static/lib/libpetsc.a:ctetgen.c.o:00000000000054e0 T PLCDestroy
mpich-static/lib/libpetsc.a:asa.c.o:00000000000019af T PrintEnergyNormOfDiff
mpich-static/lib/libpetsc.a:asa.c.o:000000000000151d T PrintResNorm
mpich-static/lib/libpetsc.a:pthreadpool_chain.c.o:0000000000000008 C
pVal_chain
mpich-static/lib/libpetsc.a:lockfree.c.o:0000000000000008 C pVal_lockfree
mpich-static/lib/libpetsc.a:nopool.c.o:0000000000000008 C pVal_none
mpich-static/lib/libpetsc.a:pthreadpool_true.c.o:0000000000000008 C
pVal_true
mpich-static/lib/libpetsc.a:pthread.c.o:0000000000000004 C rankkey
mpich-static/lib/libpetsc.a:tools.c.o:0000000000001415 T scaleFilterGraph
mpich-static/lib/libpetsc.a:crl.c.o:0000000000000b38 T
SeqAIJCRL_create_aijcrl
mpich-static/lib/libpetsc.a:csrperm.c.o:0000000000001ea1 T
SeqAIJPERM_create_perm
mpich-static/lib/libpetsc.a:bstream.c.o:0000000000000d54 T
SeqBSTRM_convert_bstrm
mpich-static/lib/libpetsc.a:bstream.c.o:000000000000a901 T
SeqBSTRM_create_bstrm
mpich-static/lib/libpetsc.a:sbstrmfact.c.o:00000000000069fb T
SeqSBSTRM_convertFact_sbstrm
mpich-static/lib/libpetsc.a:sbstream.c.o:0000000000000ad4 T
SeqSBSTRM_convert_sbstrm
mpich-static/lib/libpetsc.a:sbstream.c.o:0000000000006085 T
SeqSBSTRM_create_sbstrm
mpich-static/lib/libpetsc.a:iga.c.o:000000000000daf6 T SetupGauss1D
mpich-static/lib/libpetsc.a:characteristic.c.o:000000000000a284 T SiftDown
mpich-static/lib/libpetsc.a:agg.c.o:0000000000002989 T smoothAggs
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000006aa9 T
StashMPIIJAssemble_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000005162 T
StashMPIIJClear_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000004a6b T
StashMPIIJCreate_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000004df7 T
StashMPIIJDestroy_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000005aa9 T
StashMPIIJExtend_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000006144 T
StashMPIIJGetIndicesMerged_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000005e6e T
StashMPIIJGetIndices_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000005632 T
StashMPIIJGetMultivalued_Private
mpich-static/lib/libpetsc.a:stashij.c.o:000000000000583c T
StashMPIIJSetMultivalued_Private
mpich-static/lib/libpetsc.a:stashij.c.o:00000000000053c2 T
StashMPIIJSetPreallocation_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000004294 T
StashSeqIJClear_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000003152 T
StashSeqIJCreate_Private
mpich-static/lib/libpetsc.a:stashij.c.o:000000000000449d T
StashSeqIJDestroy_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000003801 T
StashSeqIJExtend_Private
mpich-static/lib/libpetsc.a:stashij.c.o:0000000000003a67 T
StashSeqIJGetIndices_Private
mpich-static/lib/libpetsc.a:stashij.c.o:00000000000033fc T
StashSeqIJGetMultivalued_Private
mpich-static/lib/libpetsc.a:stashij.c.o:00000000000035a7 T
StashSeqIJSetMultivalued_Private
mpich-static/lib/libpetsc.a:stashij.c.o:00000000000047a7 T
StashSeqIJSetPreallocation_Private
mpich-static/lib/libpetsc.a:init.c.o:0000000000000024 B synchronizeCUSP
mpich-static/lib/libpetsc.a:pthread.c.o:0000000000000008 B
ThreadCoreAffinity
mpich-static/lib/libpetsc.a:pthread.c.o:0000000000000018 B threadranks
mpich-static/lib/libpetsc.a:geo.c.o:0000000000001292 T
triangulateAndFormProl
mpich-static/lib/libpetsc.a:tv_data_display.c.o:0000000000000000 T
TV_add_row
mpich-static/lib/libpetsc.a:tv_data_display.c.o:0000000000100000 C
TV_data_format_buffer
mpich-static/lib/libpetsc.a:tv_data_display.c.o:0000000000000000 B
TV_data_format_control
mpich-static/lib/libpetsc.a:tv_data_display.c.o:0000000000000130 T
TV_post_display_callback
mpich-static/lib/libpetsc.a:tv_data_display.c.o:0000000000000120 T
TV_pre_display_callback
mpich-static/lib/libpetsc.a:complex.c.o:000000000002dd41 T
updatePointFields_private
mpich-static/lib/libpetsc.a:complex.c.o:000000000002d8c6 T
updatePoint_private
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[petsc-dev] Reminder: *every* symbol with extern linkage *must* be namespaced

[petsc-dev] Reminder: every symbol with extern linkage must be namespaced