[petsc-dev] uni

[Mark F. Adams]

Yep, need to keep the extra include with uni, but not the lib anymore.

Now I get this error, any ideas?  I need a uni regression test apparently.

[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument:
see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind!
[0]PETSC ERROR: Inner MPI_Comm does not have expected reference to outer comm!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: 3dda30872eeec1a2ea5c130f267935c5e0b2534a  HG Date: Mon Nov 21 11:19:39 2011 -0800
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./viscousTensorSolve2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.ex on a arch-maco named madams-macbk-3.local by markadams Wed Nov 23 11:25:30 2011
[0]PETSC ERROR: Libraries linked from /Users/markadams/Codes/petsc-dev/arch-macosx-gnu-seq/lib
[0]PETSC ERROR: Configure run at Tue Nov 22 12:41:46 2011
[0]PETSC ERROR: Configure options CXX=/sw/lib/gcc4.4/bin/g++-4 CC=/sw/lib/gcc4.4/bin/gcc-4 FC=/sw/lib/gcc4.4/bin/gfortran --with-x=0 --with-clanguage=c++ --with-debugging=0 --with-mpi=0 PETSC_ARCH=arch-macosx-gnu-seq
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc_DelComm() line 448 in /Users/markadams/Codes/petsc-dev/src/sys/objects/pinit.c
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument:
see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind!
[0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have inner MPI_Comm!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: 3dda30872eeec1a2ea5c130f267935c5e0b2534a  HG Date: Mon Nov 21 11:19:39 2011 -0800
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./viscousTensorSolve2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.ex on a arch-maco named madams-macbk-3.local by markadams Wed Nov 23 11:25:30 2011
[0]PETSC ERROR: Libraries linked from /Users/markadams/Codes/petsc-dev/arch-macosx-gnu-seq/lib
[0]PETSC ERROR: Configure run at Tue Nov 22 12:41:46 2011
[0]PETSC ERROR: Configure options CXX=/sw/lib/gcc4.4/bin/g++-4 CC=/sw/lib/gcc4.4/bin/gcc-4 FC=/sw/lib/gcc4.4/bin/gfortran --with-x=0 --with-clanguage=c++ --with-debugging=0 --with-mpi=0 PETSC_ARCH=arch-macosx-gnu-seq
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PetscCommDestroy() line 229 in /Users/markadams/Codes/petsc-dev/src/sys/objects/tagm.c
[0]PETSC ERROR: PetscHeaderDestroy_Private() line 110 in /Users/markadams/Codes/petsc-dev/src/sys/objects/inherit.c
[0]PETSC ERROR: MatDestroy() line 1045 in /Users/markadams/Codes/petsc-dev/src/mat/interface/matrix.c
[0]PETSC ERROR: partitionLevel() line 347 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/impls/gamg/gamg.c
[0]PETSC ERROR: PCSetUp_GAMG() line 599 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/impls/gamg/gamg.c
[0]PETSC ERROR: PCSetUp() line 819 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: KSPSetUp() line 261 in /Users/markadams/Codes/petsc-dev/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: solveprivate() line 191 in "unknowndirectory/"PetscLinearSolverI.H




On Nov 22, 2011, at 3:19 PM, Barry Smith wrote:

> 
>  You have som other MPI include file hanging around that is getting intercepted before the MPI Uni one. 
> 
>   Barry
> 
> On Nov 22, 2011, at 12:00 PM, Mark F. Adams wrote:
> 
>> Scorched earth did not work:
>> 
>> "VecCreate(ompi_communicator_t*, _p_Vec**)", referenced from:
>>     PetscLinearSolver<LevelData<FArrayBox> >::solveprivate(LevelData<FArrayBox>&, LevelData<FArrayBox> const&) in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
>> "_ompi_mpi_comm_self", referenced from:
>>     _ompi_mpi_comm_self$non_lazy_ptr in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
>> 
>> <configure.log.gz>
>> 
>> On Nov 22, 2011, at 11:47 AM, Satish Balay wrote:
>> 
>>> Something is strange.
>>> 
>>> I'll suggeset
>>> 
>>> rm -rf externalpackages arch-macosx-gnu-seq
>>> 
>>> and then doing a fresh build.
>>> 
>>> And then verifying the build with 'make test'
>>> 
>>> If 'make test' works - and the application build is not working- I'd
>>> like to see the complete compile log thats producing this error.
>>> 
>>> 
>>> wrt libmpiuni.a - all the relavent stuff is added to libpetsc.a and a separate
>>> libmpiuni.a is not created.
>>> 
>>> Satish
>>> 
>>> On Tue, 22 Nov 2011, Mark F. Adams wrote:
>>> 
>>>> I'm trying to build a non MPI code and get this error:
>>>> 
>>>> Undefined symbols:
>>>> "_ompi_mpi_comm_self", referenced from:
>>>>    _ompi_mpi_comm_self$non_lazy_ptr in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
>>>>   (maybe you meant: _ompi_mpi_comm_self$non_lazy_ptr)
>>>> 
>>>> 
>>>> In the past I have linked libmpiuni.a but that did not seem to get created.  Did libmpiuni.a go away or did my make fail ...
>>>> 
>>>> Mark
>>>> 
>>> 
>>> 
>> 
> 
>