[petsc-dev] PETSC's compilation
Satish Balay
balay at mcs.anl.gov
Wed Mar 24 12:09:44 CDT 2010
moving this discussion to petsc-maint. Not appropriate for petsc-dev
satish
On Wed, 24 Mar 2010, David sheehan wrote:
> That was an old try.
>
> My new try including all output information is the following. Everything is
> OK except for "make test" has one error.
> I checked the library of HYPRE. All HYPRE libs have been created, but they
> cannot be installed with PETSC libs.
> And I manually copy all HYPRE libs into the directory of the final-installed
> PETSC's libs, but "make test" still has
> the same problem.
>
> Please fix it, thanks.
>
> David
> -----------------------------------------------the final installed
> libs-------------------------------------------------------------------------------------------------
> [ petsc-2.3.3-p15]$ ls /home/David/petsc233-p15/lib/linux-gnu-c-debug/
> libpetsc.a libpetscdm.a libpetscmat.a libpetscts.a
> libpetsccontrib.a libpetscksp.a libpetscsnes.a libpetscvec.a
> ------------------------------------------------PETSC
> libs---------------------------------------------------------------------------------------------------
> [ petsc-2.3.3-p15]$ ls lib/linux-gnu-c-debug/
> libpetsc.a libpetscdm.a libpetscmat.a libpetscts.a
> libpetsccontrib.a libpetscksp.a libpetscsnes.a libpetscvec.a
>
> --------------------------------------------------HYPRE
> libs-------------------------------------------------------------------------------------------------
>
>
> [ petsc-2.3.3-p15]$ ls externalpackages/hypre-2.0.0/linux-gnu-c-debug/lib/
> libHYPRE.a libHYPRE_MatrixMatrix.a
> libHYPRE_sstruct_ls.a
> libHYPRE_DistributedMatrix.a libHYPRE_multivector.a
> libHYPRE_sstruct_mv.a
> libHYPRE_DistributedMatrixPilutSolver.a libHYPRE_ParaSails.a
> libHYPRE_struct_ls.a
> libHYPRE_Euclid.a libHYPRE_parcsr_block_mv.a
> libHYPRE_struct_mv.a
> libHYPRE_IJ_mv.a libHYPRE_parcsr_ls.a
> libHYPRE_utilities.a
> libHYPRE_krylov.a libHYPRE_parcsr_mv.a
> libHYPRE_LSI.a libHYPRE_seq_mv.a
> ----------------------------------------configure------------------------------------------------------------------------------------------------------
> [ petsc-2.3.3-p15]$ export PETSC_DIR=$PWD
> [ petsc-2.3.3-p15]$ ./config/configure.py --prefix=/home/David/petsc233-p15
> --with-cc=gcc --with-cxx=g++ --with-fc=ifort --with-mpi-dir=/opt/openmpi
> --with-hypre=1 --download-hypre=ifneeded
> =================================================================================
> Configuring PETSc to compile on your system
> =================================================================================
> TESTING: configureLibrary from
> PETSc.packages.hypre(python/PETSc/packages/hypre.py:120)
> using: --with-MPI-include="/opt/openmpi/include"
> Compilers:
> C Compiler: gcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> -g3
> C++ Compiler: g++ -Wall -Wwrite-strings -Wno-strict-aliasing -g
> -fPIC
> Fortran Compiler: ifort -fPIC -g
> Linkers:
> Shared linker: gcc -shared -fPIC -Wall -Wwrite-strings
> -Wno-strict-aliasing -g3
> Dynamic linker: gcc -shared -fPIC -Wall -Wwrite-strings
> -Wno-strict-aliasing -g3
> PETSc:
> **
> ** Before running "make" your PETSC_ARCH must be specified with:
> ** ** setenv PETSC_ARCH linux-gnu-c-debug (csh/tcsh)
> ** ** PETSC_ARCH=linux-gnu-c-debug; export PETSC_ARCH (sh/bash)
> **
> PETSC_DIR: /home/David/petsc/petsc-2.3.3-p15
> **
> ** Now build and test the libraries with "make all test"
> **
> Clanguage: C
> PETSc shared libraries: disabled
> PETSc dynamic libraries: disabled
> Scalar type:real
> MPI:
> Includes: ['/opt/openmpi/include']
> Library: ['/opt/openmpi/lib/libmpi.a']
> X11:
> Includes: ['-I/usr/X11R6/include']
> Library: ['-L/usr/X11R6/lib -lX11']
> BLAS/LAPACK: -llapack -lblas
> hypre:
> Includes:
> ['/home/David/petsc/petsc-2.3.3-p15/externalpackages/hypre-2.0.0/linux-gnu-c-debug/include']
> Library:
> ['/home/David/petsc/petsc-2.3.3-p15/externalpackages/hypre-2.0.0/linux-gnu-c-debug/lib/libHYPRE.a',
> '-Wl,-rpath,/usr/lib/gcc/i386-redhat-linux/3.4.6',
> '-Wl,-rpath,/usr/lib/gcc/i386-redhat-linux/3.4.6/../../..', '-lstdc++']
> ---------------------------------------------------make
> install---------------------------------------------------------------------------------
> Installing PETSc at /home/David/petsc233-p15
> Shared libraries disabled
> sh/bash: PETSC_DIR=/home/David/petsc233-p15; export PETSC_DIR
> csh/tcsh: setenv PETSC_DIR /home/David/petsc233-p15
> Then do make test to verify correct install
> ---------------------------------------------------make
> test-------------------------------------------------------------------------------------
> Running test examples to verify correct installation
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> process
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> processes
> Possible error running Graphics examples src/snes/examples/tutorials/ex19 1
> MPI process
> See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Error in external library!
> [0]PETSC ERROR: Unable to open display on apmachine:0.0
> . Make sure your COMPUTE NODES are authorized to connect
> to this X server and either your DISPLAY variable
> is set or you use the -display name option
> !
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 15, Tue Sep 23 10:02:49
> CDT 2008 HG revision: 31306062cd1a6f6a2496fccb4878f485c9b91760
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex19 on a linux-gnu named apmachine by David Wed Mar 24
> 11:41:48 2010
> [0]PETSC ERROR: Libraries linked from
> /home/David/petsc233-p15/lib/linux-gnu-c-debug
> [0]PETSC ERROR: Configure run at Wed Mar 24 11:21:40 2010
> [0]PETSC ERROR: Configure options --prefix=/home/David/petsc233-p15
> --with-cc=gcc --with-cxx=g++ --with-fc=ifort --with-mpi-dir=/opt/openmpi
> --with-hypre=1 --download-hypre=ifneeded --with-shared=0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: PetscDrawXGetDisplaySize_Private() line 618 in
> src/sys/draw/impls/x/xops.c
> [0]PETSC ERROR: PETSc unable to use X windows
> proceeding without graphics
> Number of Newton iterations = 2
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> Number of Newton iterations = 2
> Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI
> process
> Completed test examples
>
> On Wed, Mar 24, 2010 at 9:35 AM, Satish Balay <balay at mcs.anl.gov> wrote:
>
> > On Tue, 23 Mar 2010, David sheehan wrote:
> >
> > > I try openmpi, there are the following error,
> > >
> > > ./configure --prefix=/home/David/petsc300p11_openmpi --with-cc=gcc
> > > --with-cxx=g++ --with-fc=ifort --download-openmpi=1 --download-hypre=1
> > >
> > =================================================================================
> > > Configuring PETSc to compile on your system
> > >
> > =================================================================================
> > > TESTING: check from
> > > config.libraries(config/BuildSystem/config/libraries.py:126)
> > >
> > *********************************************************************************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> > > details):
> > >
> > ---------------------------------------------------------------------------------------
> > > Currently --download-openmpi option does not work with --prefix install.
> > > Suggest installing OpenMPI separately, and then configuring PETSc with
> > > --with-mpi-dir option.
> > >
> > *********************************************************************************
> > >
> > > How to fix it? thanks.
> >
> > configure already gave the answer to your question
> >
> > satish
> >
>
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