Did someone fucking break bfort?

[Matthew Knepley]

On Mon, Dec 21, 2009 at 2:33 PM, Satish Balay <balay at mcs.anl.gov> wrote:

> hmm - the tarball is a year old..
>
> [petsc:pub/petsc/externalpackages] petsc> ls -lt sowing-1.1.11-a.tar.gz
> -rw-r--r-- 1 petsc pdetools 630610 2008-12-15 22:21 sowing-1.1.11-a.tar.gz
> [petsc:pub/petsc/externalpackages] petsc>
>

Something is screwed. It stopped working this morning when I tried to
rebuild, then
reconfigure, then scorched earth reconfigure. Who touched this last? Also,
here is
the specific fail:

knepley at khan:/PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps$ valgrind
/PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort -dir
/PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps/ftn-auto -mnative -ansi
-nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc -ptr64
PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS -fuscore
PETSC_HAVE_FORTRAN_UNDERSCORE mumps.c

It says there is a stack smash and no other info. This is completely fucking
my development right now.

  Matt


> Satish
>
> On Mon, 21 Dec 2009, Matthew Knepley wrote:
>
> > I killed my directory, removed sowing from extpacks, and reran configure,
> > but I get
> >
> >                                TESTING: checkSharedLibrary from
> > PETSc.packages.sowing(config/BuildSystem/config/package.py:423)
> > *** stack smashing detected ***:
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort terminated
> > ======= Backtrace: =========
> > /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x48)[0xb7daf138]
> > /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x0)[0xb7daf0f0]
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x8052504]
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a686]
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a0b3]
> > /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7cd8450]
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x80490b1]
> > ======= Memory map: ========
> > 08048000-08054000 r-xp 00000000 08:06 5030686
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort
> > 08054000-08055000 rw-p 0000c000 08:06 5030686
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort
> > 08055000-08077000 rw-p 08055000 00:00 0          [heap]
> > b7cc1000-b7cc2000 rw-p b7cc1000 00:00 0
> > b7cc2000-b7e0b000 r-xp 00000000 08:06 2352482    /lib/tls/i686/cmov/
> > libc-2.7.so
> > b7e0b000-b7e0c000 r--p 00149000 08:06 2352482    /lib/tls/i686/cmov/
> > libc-2.7.so
> > b7e0c000-b7e0e000 rw-p 0014a000 08:06 2352482    /lib/tls/i686/cmov/
> > libc-2.7.so
> > b7e0e000-b7e11000 rw-p b7e0e000 00:00 0
> > b7e11000-b7e18000 r-xp 00000000 08:06 2352512    /lib/tls/i686/cmov/
> > librt-2.7.so
> > b7e18000-b7e1a000 rw-p 00006000 08:06 2352512    /lib/tls/i686/cmov/
> > librt-2.7.so
> > b7e1a000-b7e1b000 rw-p b7e1a000 00:00 0
> > b7e1b000-b7e2f000 r-xp 00000000 08:06 2352508    /lib/tls/i686/cmov/
> > libpthread-2.7.so
> > b7e2f000-b7e31000 rw-p 00013000 08:06 2352508    /lib/tls/i686/cmov/
> > libpthread-2.7.so
> > b7e31000-b7e33000 rw-p b7e31000 00:00 0
> > b7e38000-b7e42000 r-xp 00000000 08:06 2334868    /lib/libgcc_s.so.1
> > b7e42000-b7e43000 rw-p 0000a000 08:06 2334868    /lib/libgcc_s.so.1
> > b7e43000-b7e46000 rw-p b7e43000 00:00 0
> > b7e46000-b7f04000 r-xp 00000000 08:06 5030650
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1
> > b7f04000-b7f07000 rw-p 000bd000 08:06 5030650
> > /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1
> > b7f07000-b7f29000 rw-p b7f07000 00:00 0
> > b7f29000-b7f2a000 r-xp b7f29000 00:00 0          [vdso]
> > b7f2a000-b7f44000 r-xp 00000000 08:06 2335045    /lib/ld-2.7.so
> > b7f44000-b7f46000 rw-p 00019000 08:06 2335045    /lib/ld-2.7.so
> > bfb51000-bfb66000 rw-p bffeb000 00:00 0          [stack]
> >
> *********************************************************************************
> >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
> > details):
> >
> ---------------------------------------------------------------------------------------
> > *******Error generating Fortran stubs: Error running bfort Aborted*******
> >
> *********************************************************************************
> >
> >    Matt
> >
> >
>
>


-- 
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20091221/6178c6c0/attachment.html>