On Mon, Dec 21, 2009 at 2:33 PM, Satish Balay <span dir="ltr"><<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>></span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
hmm - the tarball is a year old..<br>
<br>
[petsc:pub/petsc/externalpackages] petsc> ls -lt sowing-1.1.11-a.tar.gz<br>
-rw-r--r-- 1 petsc pdetools 630610 2008-12-15 22:21 sowing-1.1.11-a.tar.gz<br>
[petsc:pub/petsc/externalpackages] petsc><font color="#888888"><br></font></blockquote><div><br>Something is screwed. It stopped working this morning when I tried to rebuild, then<br>reconfigure, then scorched earth reconfigure. Who touched this last? Also, here is<br>
the specific fail:<br><br>knepley@khan:/PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps$ valgrind /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort -dir /PETSc3/petsc/petsc-dev/src/mat/impls/aij/mpi/mumps/ftn-auto -mnative -ansi -nomsgs -noprofile -anyname -mapptr -mpi -mpi2 -ferr -ptrprefix Petsc -ptr64 PETSC_USE_POINTER_CONVERSION -fcaps PETSC_HAVE_FORTRAN_CAPS -fuscore PETSC_HAVE_FORTRAN_UNDERSCORE mumps.c<br>
<br>It says there is a stack smash and no other info. This is completely fucking my development right now.<br><br> Matt<br> </div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<font color="#888888">
Satish<br>
</font><div><div></div><div class="h5"><br>
On Mon, 21 Dec 2009, Matthew Knepley wrote:<br>
<br>
> I killed my directory, removed sowing from extpacks, and reran configure,<br>
> but I get<br>
><br>
> TESTING: checkSharedLibrary from<br>
> PETSc.packages.sowing(config/BuildSystem/config/package.py:423)<br>
> *** stack smashing detected ***:<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort terminated<br>
> ======= Backtrace: =========<br>
> /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x48)[0xb7daf138]<br>
> /lib/tls/i686/cmov/libc.so.6(__fortify_fail+0x0)[0xb7daf0f0]<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x8052504]<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a686]<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x804a0b3]<br>
> /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7cd8450]<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort[0x80490b1]<br>
> ======= Memory map: ========<br>
> 08048000-08054000 r-xp 00000000 08:06 5030686<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort<br>
> 08054000-08055000 rw-p 0000c000 08:06 5030686<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/bin/bfort<br>
> 08055000-08077000 rw-p 08055000 00:00 0 [heap]<br>
> b7cc1000-b7cc2000 rw-p b7cc1000 00:00 0<br>
> b7cc2000-b7e0b000 r-xp 00000000 08:06 2352482 /lib/tls/i686/cmov/<br>
> <a href="http://libc-2.7.so" target="_blank">libc-2.7.so</a><br>
> b7e0b000-b7e0c000 r--p 00149000 08:06 2352482 /lib/tls/i686/cmov/<br>
> <a href="http://libc-2.7.so" target="_blank">libc-2.7.so</a><br>
> b7e0c000-b7e0e000 rw-p 0014a000 08:06 2352482 /lib/tls/i686/cmov/<br>
> <a href="http://libc-2.7.so" target="_blank">libc-2.7.so</a><br>
> b7e0e000-b7e11000 rw-p b7e0e000 00:00 0<br>
> b7e11000-b7e18000 r-xp 00000000 08:06 2352512 /lib/tls/i686/cmov/<br>
> <a href="http://librt-2.7.so" target="_blank">librt-2.7.so</a><br>
> b7e18000-b7e1a000 rw-p 00006000 08:06 2352512 /lib/tls/i686/cmov/<br>
> <a href="http://librt-2.7.so" target="_blank">librt-2.7.so</a><br>
> b7e1a000-b7e1b000 rw-p b7e1a000 00:00 0<br>
> b7e1b000-b7e2f000 r-xp 00000000 08:06 2352508 /lib/tls/i686/cmov/<br>
> <a href="http://libpthread-2.7.so" target="_blank">libpthread-2.7.so</a><br>
> b7e2f000-b7e31000 rw-p 00013000 08:06 2352508 /lib/tls/i686/cmov/<br>
> <a href="http://libpthread-2.7.so" target="_blank">libpthread-2.7.so</a><br>
> b7e31000-b7e33000 rw-p b7e31000 00:00 0<br>
> b7e38000-b7e42000 r-xp 00000000 08:06 2334868 /lib/libgcc_s.so.1<br>
> b7e42000-b7e43000 rw-p 0000a000 08:06 2334868 /lib/libgcc_s.so.1<br>
> b7e43000-b7e46000 rw-p b7e43000 00:00 0<br>
> b7e46000-b7f04000 r-xp 00000000 08:06 5030650<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1<br>
> b7f04000-b7f07000 rw-p 000bd000 08:06 5030650<br>
> /PETSc3/petsc/petsc-dev/linux-gnu-cxx-debug/lib/libmpich.so.1.1<br>
> b7f07000-b7f29000 rw-p b7f07000 00:00 0<br>
> b7f29000-b7f2a000 r-xp b7f29000 00:00 0 [vdso]<br>
> b7f2a000-b7f44000 r-xp 00000000 08:06 2335045 /lib/<a href="http://ld-2.7.so" target="_blank">ld-2.7.so</a><br>
> b7f44000-b7f46000 rw-p 00019000 08:06 2335045 /lib/<a href="http://ld-2.7.so" target="_blank">ld-2.7.so</a><br>
> bfb51000-bfb66000 rw-p bffeb000 00:00 0 [stack]<br>
> *********************************************************************************<br>
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for<br>
> details):<br>
> ---------------------------------------------------------------------------------------<br>
> *******Error generating Fortran stubs: Error running bfort Aborted*******<br>
> *********************************************************************************<br>
><br>
> Matt<br>
><br>
><br>
<br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener<br>