[Parvis-users] Parvis-users Digest, Vol 9, Issue 3
HPCS Support
hpcssupport at tropmet.res.in
Mon Dec 1 01:44:33 CST 2014
Hi Jayesh,
ParNCL binary is created with Trilinos version 11.0.3. Thanks for your support.
-----------------------------------------------------------------------------------------
file /gpfs1/home/Libs/GNU/PARNCL/bin/parncl
/gpfs1/home/Libs/GNU/PARNCL/bin/parncl: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.18, not stripped
-----------------------------------------------------------------------------------------
Thanks
HPC Support
Ext 1502
----- Original Message -----
From: "HPCS Support" <hpcssupport at tropmet.res.in>
To: parvis-users at lists.mcs.anl.gov
Sent: Friday, November 28, 2014 10:07:28 AM
Subject: Re: Parvis-users Digest, Vol 9, Issue 3
Hi Jayesh,
I will try with older version of Trilinos, 11.0.3 or 10.6.4 and let you know.
Thanks
Amit
----- Original Message -----
From: parvis-users-request at lists.mcs.anl.gov
To: parvis-users at lists.mcs.anl.gov
Sent: Tuesday, November 25, 2014 11:30:03 PM
Subject: Parvis-users Digest, Vol 9, Issue 3
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Today's Topics:
1. Re: ParNCL build problems (Krishna, Jayesh)
----------------------------------------------------------------------
Message: 1
Date: Tue, 25 Nov 2014 17:57:35 +0000
From: "Krishna, Jayesh" <jayesh at mcs.anl.gov>
To: Aditya Support <adityasupport at tropmet.res.in>
Cc: "parvis-users at lists.mcs.anl.gov" <parvis-users at lists.mcs.anl.gov>
Subject: Re: [Parvis-users] ParNCL build problems
Message-ID: <3FAD5D5E137EB94FB3EEF63193F493B85B803AC5 at HALAS.anl.gov>
Content-Type: text/plain; charset="us-ascii"
Hi,
Which version of Trilinos are you using?
As we are debugging this issue can you try an older version of Trilinos, 11.0.3 or 10.6.4, and see if it works for you?
Regards,
Jayesh
________________________________________
From: parvis-users-bounces at lists.mcs.anl.gov [parvis-users-bounces at lists.mcs.anl.gov] on behalf of Krishna, Jayesh [jayesh at mcs.anl.gov]
Sent: Tuesday, November 25, 2014 8:59 AM
To: Aditya Support
Cc: parvis-users at lists.mcs.anl.gov
Subject: Re: [Parvis-users] ParNCL build problems
Hi,
After a closer look at the make output, it looks like parncl was not built correctly. There are many undefined references to Intrepid functions. I will ping you soon with my findings.
Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Tuesday, November 25, 2014 6:53 AM
To: Krishna, Jayesh
Cc: parvis-users at lists.mcs.anl.gov
Subject: Re: ParNCL build problems
Hi Jayesh,
Also find the below command output:
--------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ file parncl
parncl: data
--------------------------------------------------------------------------------------------------------------------
'parncl' is a data file. Please let me know whether it is created correctly or not.
Regards,
Amit
----- Original Message -----
From: "Aditya Support" <adityasupport at tropmet.res.in>
To: "Jayesh Krishna" <jayesh at mcs.anl.gov>
Cc: parvis-users at lists.mcs.anl.gov
Sent: Tuesday, November 25, 2014 6:13:07 PM
Subject: Re: ParNCL build problems
Hi Jayesh,
Yes i am having permission to execute, you can check the below command examples:
--------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls -l parncl
-rwxr-xr-x 1 ibm lsfadmin 71304088 Nov 24 16:10 parncl
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
-bash: ./parncl: cannot execute binary file
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ id
uid=502(ibm) gid=501(lsfadmin) groups=501(lsfadmin)
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
--------------------------------------------------------------------------------------------------------------------
Regards,
Amit
----- Original Message -----
From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
To: "Aditya Support" <adityasupport at tropmet.res.in>
Cc: parvis-users at lists.mcs.anl.gov
Sent: Tuesday, November 25, 2014 6:10:08 PM
Subject: RE: ParNCL build problems
Hi,
Do you have permissions to execute the binary file? Are you cross compiling your code?
I would recommend that you contact your system administrator to solve this issue. Please let us know the results.
Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Monday, November 24, 2014 11:04 PM
To: Krishna, Jayesh
Subject: Re: ParNCL build problems
Hi Jayesh,
Thanks for the reply!!!
Please find the below directory listing of /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin. Yes you are correct, parncl binary is created under bin directory. However, while executing the binary I am getting below error:
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ls
cgm2ncgm findg MakeNcl ncargfile ncarvversion ng4ex pre2ncgm ras2ccir601 rasview wrapit77
ConvertMapData fontc med ncargpath ncgm2cgm nhlcc pre2ncgm.prog rascat scrip_check_input WriteLineFile
ctlib gcaps ncargcc ncargrun ncgmstat nhlf77 psblack rasgetpal tdpackdemo WriteNameFile
ctrans graphc ncargex ncargversion ncl_convert2nc nhlf90 psplit rasls tgks0a WritePlotcharData
ezmapdemo ictrans ncargf77 ncargworld ncl_filedump nnalg pswhite rassplit tlocal
fcaps idt ncargf90 ncarlogo2ps ncl_grib2nc parncl pwritxnt rasstat WRAPIT
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $ ./parncl
-bash: ./parncl: cannot execute binary file
iitmlogin3:/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin $
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $ mpirun -np 2 parncl plot_vort.ncl
/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot execute binary file
/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin/parncl: cannot execute binary file
iitmlogin3:/gpfs3/home/iitmuser1/Bipin/ParNCL/parncl-1-0-0/example $
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Regards,
Amit
----- Original Message -----
From: "Jayesh Krishna" <jayesh at mcs.anl.gov>
To: "Aditya Support" <adityasupport at tropmet.res.in>
Sent: Monday, November 24, 2014 8:58:36 PM
Subject: RE: ParNCL build problems
Hi,
From the log it looks like the parncl executable is built and installed correctly in /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin . Can you send us the directory listing of the above directory (ls /gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin)?
Please note that installing ParNCL does not add the bin directory to your PATH (You will need to set your path correctly to use parncl - "export PATH=/gpfs3/gpfs7/home/ibm/AMIT/PARNCL/PARNCL1/PARNCL/bin:$PATH")
Regards,
Jayesh
________________________________________
From: Aditya Support [adityasupport at tropmet.res.in]
Sent: Monday, November 24, 2014 5:06 AM
To: Krishna, Jayesh
Subject: ParNCL build problems
Hi Jayesh,
I am building ParNCL on my RHEL 6.4 box. I referred below to build it from scratch:
Link --> http://trac.mcs.anl.gov/projects/parvis/wiki/BuildingParNCL
I am able to build all dependencies, but still not able to build 'parncl' binary. Please help me to correct this error and also find the attached logs.
Regards,
Amit
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