error installing parallel netcdf

[Latham, Robert J.]

Hi Phllip:  sorry for the delay -- mailman held your message for moderation (as we do for all messages from non-subscribers) and I only noticed it today.

Your compilation got pretty far along, then failed to build some of the utilities.   Could you send me (just me, not the list) your 'config.log' and let's see if we can figure out what went wrong.

Libraries like 'numa' and 'udev' aren't part of pnetcdf, so I'm curious what brought them in to your build.

==rob

________________________________________
From: parallel-netcdf <parallel-netcdf-bounces at lists.mcs.anl.gov> on behalf of Phillip Yeh <phillip.yeh at stonybrook.edu>
Sent: Friday, September 13, 2024 17:13
To: parallel-netcdf at mcs.anl.gov
Subject: error installing parallel netcdf

I was attempting to install pnetcdf on a university supercomputer, to eventually install MPAS. I was following the instructions in https: //github. com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL and had reached step (e) before encountering the
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I was attempting to install pnetcdf on a university supercomputer, to eventually install MPAS. I was following the instructions in https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL__;!!G_uCfscf7eWS!c0psZfVpquNUGHOHYIGY0iZr6Ka2n4RMMTxrNhPG-xmMZ_H7lREbuQYrax38EiaTIHO7RXUjhgNWm8gZMX_NVVoZng$ <https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL__;!!G_uCfscf7eWS!aP2Bc-BxuHpjw6xtHK8YkEpjziXZ2ltSIoiQjphxjc4_Q44nZfiIL3z-JvDtrG_LM5U6ekSJ4yfCPl-s6VRubwnHThZhdmoCthX7$> and had reached step (e) before encountering the following error:

/usr/bin/ld: cannot find -lnuma
/usr/bin/ld: cannot find -ludev
collect2: error: ld returned 1 exit status
make[3]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils/ncmpigen'
make[3]: *** [Makefile:570: ncmpigen] Error 1
make[2]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils'
make[1]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src'
make[2]: *** [Makefile:557: all-recursive] Error 1
make[1]: *** [Makefile:487: all-recursive] Error 1
make: *** [Makefile:545: all-recursive] Error 1

As I am not very familiar with running and configuring make, I am not sure what to do next. I do have MPI and NetCDF already set up.

Sincerely,
Phillip Yeh