error installing parallel netcdf
Phillip Yeh
phillip.yeh at stonybrook.edu
Fri Sep 13 17:13:37 CDT 2024
I was attempting to install pnetcdf on a university supercomputer, to
eventually install MPAS. I was following the instructions in
https://urldefense.us/v3/__https://github.com/Parallel-NetCDF/PnetCDF/blob/master/INSTALL__;!!G_uCfscf7eWS!aP2Bc-BxuHpjw6xtHK8YkEpjziXZ2ltSIoiQjphxjc4_Q44nZfiIL3z-JvDtrG_LM5U6ekSJ4yfCPl-s6VRubwnHThZhdmoCthX7$ and had
reached step (e) before encountering the following error:
/usr/bin/ld: cannot find -lnuma
/usr/bin/ld: cannot find -ludev
collect2: error: ld returned 1 exit status
make[3]: Leaving directory
'/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils/ncmpigen'
make[3]: *** [Makefile:570: ncmpigen] Error 1
make[2]: Leaving directory
'/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src/utils'
make[1]: Leaving directory '/gpfs/home/phyeh/build_WRF/pnetcdf-1.13.0/src'
make[2]: *** [Makefile:557: all-recursive] Error 1
make[1]: *** [Makefile:487: all-recursive] Error 1
make: *** [Makefile:545: all-recursive] Error 1
As I am not very familiar with running and configuring *make*, I am not
sure what to do next. I do have MPI and NetCDF already set up.
Sincerely,
Phillip Yeh
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