Path oddity in PNetCDF build/configure
Carl Ponder
cponder at nvidia.com
Sun Oct 24 13:29:43 CDT 2021
This is in a Dockerfile rather than my usual bash scripting.
Here's the PATH being printed during the build
Step 95/156 : RUN echo ${PATH}
---> Running in 8586a4aef68a
/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/bin:/usr/local/cuda/bin:/usr/local/pgi/Linux_x86_64/21.9/compilers/bin
And the mpicc location tests correctly:
Step 95/155 : RUN which mpicc
---> Running in e2161d554278
*/usr/local/bin/mpicc*
------------------------------------------------------------------------
Subject: Re: Path oddity in PNetCDF build/configure
Date: Sun, 24 Oct 2021 16:32:42 +0400
From: Bruno Pagani <bruno.pagani at astrophysics.eu>
To: Carl Ponder <cponder at nvidia.com>, Wei-keng Liao
<wkliao at eecs.northwestern.edu>
CC: parallel-netcdf at lists.mcs.anl.gov
*External email: Use caution opening links or attachments*
How do you set PATH? Did you quote it? Seems somehow your path end up
being yes, likely due to expansion of its previous value.
------------------------------------------------------------------------
Le 24 octobre 2021 16:30:03 GMT+04:00, Carl Ponder <cponder at nvidia.com>
a écrit :
When I build PNetCDF with MPICC=mpicc and mpicc on my$PATH, I see
this during the configure phase:
ENV PATH=${PATH}:/usr/local/bin
ENV MPICC mpicc
...
checking for sed handling option -i ... /usr/bin/sed -i''
*checking mpicc under yes... no*
configure: error:
-----------------------------------------------------------------------
Specified MPI C compiler "mpicc" cannot be found under yes
PnetCDF requires a working MPI C compiler. Please specify
the location
of an MPI C compiler, either in the MPICC environment variable
(not CC variable) or through --with-mpi configure flag. Abort.
-----------------------------------------------------------------------
I can work around it by making the path absolute
ENV MPICC /usr/local/bin/mpicc
...
checking for sed handling option -i ... /usr/bin/sed -i''
*checking whether /usr/local/bin/mpicc exists and is
executable... yes*
But, based on the first message, I'm thinking there's an incorrect
path-search during the configure phase.
This is with PNetCDF 1.12.2.
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