error with --enable-shared

[Laura Fowler]

Hi Wei-Keng:

Doing:
> unsetenv PNETCDF_VERBOSE_DEBUG_MODE
> ./large_files

using the same debug version as you suggested worked. Then, I tried to recompile pnetcdf from scratch without —enable-debug and I got the same error as before when running ./large_files or:

*** Testing large files, slowly.
*** Creating large file ./large_files.nc...line 264 of ../.././../pnetcdf-1.11.2/test/largefile/large_files.c: NetCDF: Index exceeds dimension bound
FAIL large_files (exit status: 1)


I really do not understand this at all.
Laura




> On Oct 5, 2019, at 9:00 AM, Wei-keng Liao <wkliao at eecs.northwestern.edu> wrote:
> 
> The output file, large_files.out, shows "*** Tests successful!”
> at the end, which means the test is passed.
> 
> The error message at line 455 of ncmpio_var.c is expected.
> It searches and checks whether a variable name was previous used.
> Since you are creating a new variable, the search for existing
> name should fail. It is an internal check and can be safely ignored.
> 
> Using the debug version of PnetCDF, can you try running this test
> program without setting the environment variable PNETCDF_VERBOSE_DEBUG_MODE?
> I.e.
> 
> unsetenv PNETCDF_VERBOSE_DEBUG_MODE
> ./large_files
> 
> If it passed, I am puzzled and believe the non-debug build of PnetCDF
> should work. I suggest you to build PnetCDF using your original settings,
> i.e. no '--enable-debug’ from scratch and run ‘make -s check’ again.
> 
> FYI. version 1.12.0 was released a few days ago. Maybe you can
> give it a try, but note 1.12.0 does not change anything related to
> the test program large_files.c.
> 
> Wei-keng
> 
>> On Oct 5, 2019, at 8:46 AM, Laura Fowler <ldfowler58 at icloud.com> wrote:
>> 
>> Hi Wei-Keng:
>> 
>> Many thanks for replying so quickly to my e-mail. I really appreciate it as I have a few deadlines coming up this month. I rebuilt pnetcdf using the debug mode from scratch, following your suggestions. I am attaching to the config.log file and the output from running large_files. I do see an error in the output large_files.out (line 455).
>> 
>> Regard,
>> Laura
>> 
>> <large_files.out><config.log>
>> 
>> 
>> 
>>> On Oct 4, 2019, at 11:08 AM, Wei-keng Liao <wkliao at eecs.northwestern.edu> wrote:
>>> 
>>> Hi Laura
>>> 
>>> I tried the failed test program ‘large_files’ on a Mac, but
>>> could not reproduce the error you encountered.
>>> 
>>> In order to get more information about the error, could you
>>> rebuild PnetCDF in debug mode, by adding the configure
>>> option '--enable-debug’. For example,
>>> 
>>> make -s distclean
>>> ./../pnetcdf-1.11.2/configure \
>>> --prefix=/Users/LauraLaptop/InstalledSoftwares/pnetcdf-1.11.2.gfortran-8.3 \
>>> --enable-shared --enable-large-file-test --enable-debug
>>> make -s -j4
>>> cd test/largefile
>>> make large_files
>>> 
>>> setenv PNETCDF_VERBOSE_DEBUG_MODE 1
>>> ./large_files
>>> 
>>> This should print the location of the error.
>>> Please send me the output. Thanks.
>>> 
>>> Wei-keng
>>> 
>>>> On Oct 3, 2019, at 5:38 PM, Laura Fowler via parallel-netcdf <parallel-netcdf at lists.mcs.anl.gov> wrote:
>>>> 
>>>> Hello:
>>>> 
>>>> I would like to compile pnetcdf-1.11.2 on my MacBook Pro (macOS Mojave 10.14.6) with the following options:
>>>> 
>>>> setenv CC mpicc
>>>> setenv CXX mpic++
>>>> setenv F77 mpif77
>>>> setenv FC mpif90
>>>> 
>>>> From my “install” directory, I used the following configure options:
>>>> ./../pnetcdf-1.11.2/configure --prefix=/Users/LauraLaptop/InstalledSoftwares/pnetcdf-1.11.2.gfortran-8.3 --enable-shared --enable-large-file-test
>>>> 
>>>> (see attached config.log).
>>>> 
>>>> <config.log>
>>>> 
>>>> I got the following error message with “make check”:
>>>> 
>>>> /Applications/Xcode.app/Contents/Developer/usr/bin/make  check-TESTS
>>>> FAIL: large_files
>>>> PASS: large_var
>>>> PASS: large_dims_vars_attrs
>>>> PASS: high_dim_var
>>>> PASS: tst_cdf5_begin
>>>> PASS: large_coalesce
>>>> PASS: bigrecords
>>>> PASS: tst_flarge
>>>> ============================================================================
>>>> Testsuite summary for PnetCDF 1.11.2
>>>> ============================================================================
>>>> # TOTAL: 8
>>>> # PASS:  7
>>>> # SKIP:  0
>>>> # XFAIL: 0
>>>> # FAIL:  1
>>>> # XPASS: 0
>>>> # ERROR: 0
>>>> ============================================================================
>>>> See test/largefile/test-suite.log
>>>> Please report to parallel-netcdf at mcs.anl.gov
>>>> ============================================================================
>>>> 
>>>> 
>>>> (see attached test-suite.log).
>>>> 
>>>> <test-suite.log>
>>>> 
>>>> I would really appreciate if you were able to help solve this issue. Thank you.
>>>> 
>>>> 
>>>> Regards,
>>>> Laura Fowler
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>> 
>> 
> 

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