error when install PnetCDF

[Wei-keng Liao]

Hi, Shizhu

The error message you got came from MPI library.
"This requires fcntl(2) to be implemented. As of 8/25/2011 it is not. Generic MPICH Message: File locking failed in ADIOI_Set_lock(fd 3,cmd F_SETLKW/7,type F_RDLCK/0,whence 0) with return value FFFFFFFF and errno 26."

Please run this MPI-IO only program to test your MPI library.
https://github.com/Parallel-NetCDF/PnetCDF/blob/master/examples/C/mpi_subarray.c

If you got the same error messages, then you need to find and use a newer version
of MPI library.

Wei-keng

> On Mar 24, 2019, at 9:31 PM, 王世柱 via parallel-netcdf <parallel-netcdf at lists.mcs.anl.gov> wrote:
> 
> Hello there,
> 
> 
> 
> this is Shizhu from China. When I intall PnetCDF on my server, I follow the following steps:
> 
> ./configure --prefix=/soa01/home/wangsz/local --with-mpi=/opt/intel/impi/5.0.0.028/intel64/bin/
> 
> make check
> 
> 
> 
> Then I got the following errors:
> 
> 
> 
> **********************************************************************************************************************
> 
> make[4]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> make  check-TESTS
> make[4]: Entering directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> make[5]: Entering directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> XFAIL: xfail_runs.sh
> FAIL: wrap_runs.sh
> ============================================================================
> Testsuite summary for PnetCDF 1.11.0
> ============================================================================
> # TOTAL: 2
> # PASS:  0
> # SKIP:  0
> # XFAIL: 1
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See src/utils/ncvalidator/test-suite.log
> Please report to parallel-netcdf at mcs.anl.gov
> ============================================================================
> make[5]: *** [test-suite.log] Error 1
> make[5]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> make[4]: *** [check-TESTS] Error 2
> make[4]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> make[3]: *** [check-am] Error 2
> make[3]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils/ncvalidator'
> make[2]: *** [check-recursive] Error 1
> make[2]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src/utils'
> make[1]: *** [check-recursive] Error 1
> make[1]: Leaving directory `/soa01/home/wangsz/local/src/pnetcdf-1.11.0/src'
> make: *** [check-recursive] Error 1
> 
> 
> **********************************************************************************************************************
> 
> 
> Enclosed is the log file in src/utils/ncvalidator/test-suite.log
> 
> 
> 
> Best,
> 
> Shizhu
> 
> <test-suite.log>