problem with installation

[Bartlomiej Burba]

Hello,

Thank you very much for quick response, I will investigate MPI-IO 
library issue.
---
Regards,
Bartek Burba

On 02/08/2018 10:37 PM, Wei-keng Liao wrote:
> Hi Bartek
>
> This error is because the MPI-IO library you are using
> does not support large single I/O requests (each with amount > 2GiB).
> In fact, most of the MPI-IO libraries are yet to support it.
>
> Please remove "--enable-large-req” from your configure command
> line and that should work.
>
> Wei-keng
>
>> On Feb 8, 2018, at 9:04 AM, Bartlomiej Burba <scanya at man.poznan.pl> wrote:
>>
>> Hello,
>>
>>
>> I've try find any information in google how to sort it out, but there is no information about this kind of error.
>> My software:
>>
>>    1) gmp/5.1.3(default)                 3) libmpc/1.0.1(default)              5) icc/17.0.1(default)                7) ifort/17.0.1(default)              9) zlib/1.2.11_icc-17.0.1
>>    2) mpfr/3.1.2(default)                4) gcc/6.2.0                          6) impi/2017.1.132(default)           8) szip/2.1.1                        10) hdf5/1.8.20_impi-2017_icc-17.0.1
>>
>> ./configure --enable-large-file-test --enable-large-req --enable-shared --prefix=/opt/exp_soft/local/generic/parallel-netcdf/1.9.0
>> Could you help me ?
>> [scanya at e0001 largefile]$ cat test-suite.log
>> ==========================================================
>>     parallel-netcdf 1.9.0: test/largefile/test-suite.log
>> ==========================================================
>>
>> # TOTAL: 7
>> # PASS:  5
>> # SKIP:  0
>> # XFAIL: 0
>> # FAIL:  2
>> # XPASS: 0
>> # ERROR: 0
>>
>> .. contents:: :depth: 2
>>
>> FAIL: large_files
>> =================
>>
>>
>> *** Testing large files, slowly.
>> *** Creating large file /mnt/lustre/scanya/./large_files.nc...line 146 of large_files.c: NetCDF: Index exceeds dimension bound
>> FAIL large_files (exit status: 1)
>>
>> FAIL: large_coalesce
>> ====================
>>
>> *** TESTING C   large_coalesce for skip filetype buftype coalesce  ------ MPI error (MPI_File_read_at_all) : Other I/O error , error stack:
>> ADIOI_NFS_READSTRIDED(545): Other I/O error Bad address
>> Error at line 182 in large_coalesce.c: (NC_EREAD)
>> 0 (at line 187): expect buf[1073741814]=97 but got 0
>> 0 (at line 187): expect buf[1073741815]=98 but got 0
>> 0 (at line 187): expect buf[1073741816]=99 but got 0
>> 0 (at line 187): expect buf[1073741817]=100 but got 0
>> 0 (at line 187): expect buf[1073741818]=101 but got 0
>> 0 (at line 187): expect buf[1073741819]=102 but got 0
>> 0 (at line 187): expect buf[1073741820]=103 but got 0
>> 0 (at line 187): expect buf[1073741821]=104 but got 0
>> 0 (at line 187): expect buf[1073741822]=105 but got 0
>> 0 (at line 187): expect buf[1073741823]=106 but got 0
>> 0 (at line 187): expect buf[1073741824]=107 but got 0
>> 0 (at line 187): expect buf[1073741825]=108 but got 0
>> 0 (at line 187): expect buf[1073741826]=109 but got 0
>> 0 (at line 187): expect buf[1073741827]=110 but got 0
>> 0 (at line 187): expect buf[1073741828]=111 but got 0
>> 0 (at line 187): expect buf[1073741829]=112 but got 0
>> 0 (at line 187): expect buf[1073741830]=113 but got 0
>> 0 (at line 187): expect buf[1073741831]=114 but got 0
>> 0 (at line 187): expect buf[1073741832]=115 but got 0
>> 0 (at line 187): expect buf[1073741833]=116 but got 0
>> 0 (at line 195): expect buf[2147483638]=65 but got 0
>> 0 (at line 195): expect buf[2147483639]=66 but got 0
>> 0 (at line 195): expect buf[2147483640]=67 but got 0
>> 0 (at line 195): expect buf[2147483641]=68 but got 0
>> 0 (at line 195): expect buf[2147483642]=69 but got 0
>> 0 (at line 195): expect buf[2147483643]=70 but got 0
>> 0 (at line 195): expect buf[2147483644]=71 but got 0
>> 0 (at line 195): expect buf[2147483645]=72 but got 0
>> 0 (at line 195): expect buf[2147483646]=73 but got 0
>> 0 (at line 195): expect buf[2147483647]=74 but got 0
>> 0 (at line 195): expect buf[2147483648]=75 but got 0
>> 0 (at line 195): expect buf[2147483649]=76 but got 0
>> 0 (at line 195): expect buf[2147483650]=77 but got 0
>> 0 (at line 195): expect buf[2147483651]=78 but got 0
>> 0 (at line 195): expect buf[2147483652]=79 but got 0
>> 0 (at line 195): expect buf[2147483653]=80 but got 0
>> 0 (at line 195): expect buf[2147483654]=81 but got 0
>> 0 (at line 195): expect buf[2147483655]=82 but got 0
>> 0 (at line 195): expect buf[2147483656]=83 but got 0
>> 0 (at line 195): expect buf[2147483657]=84 but got 0
>> fail with 41 mismatches
>> FAIL large_coalesce (exit status: 1)
>> Thank you!
>> ----
>> Regards,
>>
>> Bartek Burba
>>
>> System Administrator
>> Poznan Supercomputing & Networking Center
>>