problem with installation

[Wei-keng Liao]

Hi Bartek

This error is because the MPI-IO library you are using
does not support large single I/O requests (each with amount > 2GiB).
In fact, most of the MPI-IO libraries are yet to support it.

Please remove "--enable-large-req” from your configure command
line and that should work.

Wei-keng

> On Feb 8, 2018, at 9:04 AM, Bartlomiej Burba <scanya at man.poznan.pl> wrote:
> 
> Hello,
> 
> 
> I've try find any information in google how to sort it out, but there is no information about this kind of error.
> My software:
> 
>   1) gmp/5.1.3(default)                 3) libmpc/1.0.1(default)              5) icc/17.0.1(default)                7) ifort/17.0.1(default)              9) zlib/1.2.11_icc-17.0.1
>   2) mpfr/3.1.2(default)                4) gcc/6.2.0                          6) impi/2017.1.132(default)           8) szip/2.1.1                        10) hdf5/1.8.20_impi-2017_icc-17.0.1
> 
> ./configure --enable-large-file-test --enable-large-req --enable-shared --prefix=/opt/exp_soft/local/generic/parallel-netcdf/1.9.0
> Could you help me ?
> [scanya at e0001 largefile]$ cat test-suite.log 
> ==========================================================
>    parallel-netcdf 1.9.0: test/largefile/test-suite.log
> ==========================================================
> 
> # TOTAL: 7
> # PASS:  5
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  2
> # XPASS: 0
> # ERROR: 0
> 
> .. contents:: :depth: 2
> 
> FAIL: large_files
> =================
> 
> 
> *** Testing large files, slowly.
> *** Creating large file /mnt/lustre/scanya/./large_files.nc...line 146 of large_files.c: NetCDF: Index exceeds dimension bound
> FAIL large_files (exit status: 1)
> 
> FAIL: large_coalesce
> ====================
> 
> *** TESTING C   large_coalesce for skip filetype buftype coalesce  ------ MPI error (MPI_File_read_at_all) : Other I/O error , error stack:
> ADIOI_NFS_READSTRIDED(545): Other I/O error Bad address
> Error at line 182 in large_coalesce.c: (NC_EREAD)
> 0 (at line 187): expect buf[1073741814]=97 but got 0
> 0 (at line 187): expect buf[1073741815]=98 but got 0
> 0 (at line 187): expect buf[1073741816]=99 but got 0
> 0 (at line 187): expect buf[1073741817]=100 but got 0
> 0 (at line 187): expect buf[1073741818]=101 but got 0
> 0 (at line 187): expect buf[1073741819]=102 but got 0
> 0 (at line 187): expect buf[1073741820]=103 but got 0
> 0 (at line 187): expect buf[1073741821]=104 but got 0
> 0 (at line 187): expect buf[1073741822]=105 but got 0
> 0 (at line 187): expect buf[1073741823]=106 but got 0
> 0 (at line 187): expect buf[1073741824]=107 but got 0
> 0 (at line 187): expect buf[1073741825]=108 but got 0
> 0 (at line 187): expect buf[1073741826]=109 but got 0
> 0 (at line 187): expect buf[1073741827]=110 but got 0
> 0 (at line 187): expect buf[1073741828]=111 but got 0
> 0 (at line 187): expect buf[1073741829]=112 but got 0
> 0 (at line 187): expect buf[1073741830]=113 but got 0
> 0 (at line 187): expect buf[1073741831]=114 but got 0
> 0 (at line 187): expect buf[1073741832]=115 but got 0
> 0 (at line 187): expect buf[1073741833]=116 but got 0
> 0 (at line 195): expect buf[2147483638]=65 but got 0
> 0 (at line 195): expect buf[2147483639]=66 but got 0
> 0 (at line 195): expect buf[2147483640]=67 but got 0
> 0 (at line 195): expect buf[2147483641]=68 but got 0
> 0 (at line 195): expect buf[2147483642]=69 but got 0
> 0 (at line 195): expect buf[2147483643]=70 but got 0
> 0 (at line 195): expect buf[2147483644]=71 but got 0
> 0 (at line 195): expect buf[2147483645]=72 but got 0
> 0 (at line 195): expect buf[2147483646]=73 but got 0
> 0 (at line 195): expect buf[2147483647]=74 but got 0
> 0 (at line 195): expect buf[2147483648]=75 but got 0
> 0 (at line 195): expect buf[2147483649]=76 but got 0
> 0 (at line 195): expect buf[2147483650]=77 but got 0
> 0 (at line 195): expect buf[2147483651]=78 but got 0
> 0 (at line 195): expect buf[2147483652]=79 but got 0
> 0 (at line 195): expect buf[2147483653]=80 but got 0
> 0 (at line 195): expect buf[2147483654]=81 but got 0
> 0 (at line 195): expect buf[2147483655]=82 but got 0
> 0 (at line 195): expect buf[2147483656]=83 but got 0
> 0 (at line 195): expect buf[2147483657]=84 but got 0
> fail with 41 mismatches
> FAIL large_coalesce (exit status: 1)
> Thank you!
> ----
> Regards,
> 
> Bartek Burba
> 
> System Administrator
> Poznan Supercomputing & Networking Center
>