problem building with openmpi

[Jim Edwards]

On Mon, Nov 6, 2017 at 9:16 AM, Jim Edwards <jedwards at ucar.edu> wrote:

> I am trying to build with openmpi/3.0.0 and intel17 and hanging in the
> build
> of pnetcdf.f90.
>
> The make output at the time is:
>
> make[4]: Entering directory '/glade/u/home/jedwards/src/
> parallel-netcdf/src/binding/f90'
>
>   FC       pnetcdf.lo
>
> examining the process I see:
>
> /glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/bin/intel64/ifort
> -I. -I. -debug minimal -g -O0 -c pnetcdf.f90 -o pnetcdf.o
> -I/glade/u/apps/ch/os/usr/include -L/glade/u/apps/opt/intel/
> 2017u1/compilers_and_libraries/linux/lib/intel64_lin
> -L/glade/u/apps/ch/os/usr/lib64 -L/glade/u/apps/ch/os/lib64
> -L/glade/u/apps/ch/os/usr/lib -L/glade/u/apps/ch/os/lib
> -L/glade/u/apps/ch/opt/openmpi/3.0.0/intel/17.0.1/lib
> -Wl,--disable-new-dtags -Wl,-rpath,/glade/u/apps/opt/
> intel/2017u1/compilers_and_libraries/linux/lib/intel64_lin
> -Wl,-rpath,/glade/u/apps/ch/os/usr/lib64 -Wl,-rpath,/glade/u/apps/ch/os/lib64
> -Wl,-rpath,/glade/u/apps/ch/os/usr/lib -Wl,-rpath,/glade/u/apps/ch/os/lib
> -Wl,-rpath,/glade/u/apps/ch/opt/openmpi/3.0.0/intel/17.0.1/lib -lrt -ldl
>
>
> ​Please ignore the following incorrect statement, I did this in another
window where I still had the default mpt loaded instead of openmpi, if I do
this with openmpi, it still hangs. ​




> If I remove all of the -L and -rpath flags and just do:
>
>  /glade/u/apps/opt/intel/2017u1/compilers_and_libraries/linux/bin/intel64/ifort
> -I. -I. -debug minimal -g -O0 -c pnetcdf.f90 -o pnetcdf.o
> That completes right away, so the problem seems to have to do with
> libtool.   Also building with mpt instead of openmpi on the same system
> works.
>
> Any ideas?
>
> --
> Jim Edwards
>
> CESM Software Engineer
> National Center for Atmospheric Research
> Boulder, CO
>



-- 
Jim Edwards

CESM Software Engineer
National Center for Atmospheric Research
Boulder, CO
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/parallel-netcdf/attachments/20171106/a38bfa67/attachment.html>