Tests failure when building on i686
Bruno Pagani
bruno.pagani at astrophysics.eu
Tue Jun 20 06:16:47 CDT 2017
Hi there,
Me again, still packaging for ArchLinux. When trying to build for i686,
whether I’m using OpenMPI 1.10.6 or OpenMPI 2.1, tests are failing with
what seems to be an issue with the size of some type. Log below:
make -C test testing
make[1]: Entering directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test'
make -w -C common testing
make[2]: Entering directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test/common'
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I../../src/lib -DHAVE_CONFIG_H
-D_FORTIFY_SOURCE=2 -fPIC -c testutils.c
/usr/bin/mpif90 -I../../src/lib -g -O2 -c testutilsf.F90
ar cru libtestutils.a testutils.o testutilsf.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[2]: Leaving directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test/common'
make -w -C nc_test testing
make[2]: Entering directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test/nc_test'
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF tests.h.m4 >tests.h
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c nc_test.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c error.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c util.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_get.m4 >test_get.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_get.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_put.m4 >test_put.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_put.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_iget.m4 >test_iget.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_iget.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_iput.m4 >test_iput.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_iput.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_read.m4 >test_read.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_read.c
m4 -I/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/scripts
-DPNETCDF test_write.m4 >test_write.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c test_write.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o nc_test nc_test.o error.o util.o
test_get.o test_put.o test_iget.o test_iput.o test_read.o test_write.o
-L../common -Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c t_nc.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o t_nc t_nc.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_misc.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_misc tst_misc.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_norm.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_norm tst_norm.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_small.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_small tst_small.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_names.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_names tst_names.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_atts3.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_atts3 tst_atts3.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_atts.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_atts tst_atts.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -I. -I../../src/lib -I. -I./../common
-DHAVE_CONFIG_H -D_FORTIFY_SOURCE=2 -fPIC -c tst_nofill.c
/usr/bin/mpicc -march=i686 -mtune=generic -O2 -pipe
-fstack-protector-strong -o tst_nofill tst_nofill.o -L../common
-Wl,-O1,--sort-common,--as-needed,-z,relro
/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/src/lib/libpnetcdf.a
-ltestutils -lm
rm -f ./scratch.nc
rm -f ./testfile.nc
rm -f ./tooth-fairy.nc
./nc_test -c -d .
./nc_test -d .
*** TESTING C nc_test for format CDF-1
------ MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
pass
./nc_test -c -2 -d .
FAILURE at line 842 of write_file in util.c: ncmpi_create: Size
of MPI_Offset or MPI_Aint too small for requested format
FAILURE at line 718 of def_dims in util.c: ncmpi_def_dim:
NetCDF: Not a valid ID
FAILURE at line 718 of def_dims in util.c: ncmpi_def_dim:
NetCDF: Not a valid ID
FAILURE at line 718 of def_dims in util.c: ncmpi_def_dim:
NetCDF: Not a valid ID
FAILURE at line 718 of def_dims in util.c: ncmpi_def_dim:
NetCDF: Not a valid ID
FAILURE at line 718 of def_dims in util.c: ncmpi_def_dim:
NetCDF: Not a valid ID
FAILURE at line 732 of def_vars in util.c: ncmpi_def_var:
NetCDF: Not a valid ID
FAILURE at line 732 of def_vars in util.c: ncmpi_def_var:
NetCDF: Not a valid ID./nc_test -2 -d .
FAILURE at line 180 of test_ncmpi_open in test_read.c: create:
Size of MPI_Offset or MPI_Aint too small for requested format
FAILURE at line 185 of test_ncmpi_open in test_read.c: open: The
specified netCDF file does not exist.
FAILURE at line 192 of test_ncmpi_open in test_read.c: remove of
./scratch.nc failed
### 3 FAILURES TESTING test_ncmpi_open! Stop ... ###
./nc_test: expects 0 failures ... *** TESTING C nc_test for format
CDF-2 ------ MPI error (MPI_File_delete) :
MPI_ERR_IO: input/output error
fail with 3 mismatches
make[2]: *** [Makefile:98: testing] Error 1
make[2]: Leaving directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test/nc_test'
make[1]: *** [Makefile:62: check-nc_test] Error 2
make[1]: Leaving directory
'/build/parallel-netcdf-openmpi/src/parallel-netcdf-1.8.1/test'
make: *** [Makefile:82: check] Error 2
Thanks for taking a look at this,
Bruno
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