pnetcdf-1.7.0 and MPT

Jim Edwards jedwards at ucar.edu
Wed Sep 21 15:28:21 CDT 2016


There wasn't anything useful in the README.SGI as far as I could tell.  I
am exploring getting an update to MPT/2.15 which may solve the problem.

On Wed, Sep 21, 2016 at 11:53 AM, Jim Edwards <jedwards at ucar.edu> wrote:

> Thanks - I'll give that a try and let you know.
>
> On Wed, Sep 21, 2016 at 11:50 AM, Wei-keng Liao <
> wkliao at eecs.northwestern.edu> wrote:
>
>> Hi, Jim, Michael
>>
>> Eric Kemp @ NASA/GSFC also encountered a similar error message.
>> http://lists.mcs.anl.gov/pipermail/parallel-netcdf/2016-June/001854.html
>>
>> It seems like he was able to solve the problem by trying the build recipe
>> in README.SGI. Let me know whether this works for you.
>>
>> Wei-keng
>>
>> On Sep 21, 2016, at 12:36 PM, Michael Raymond wrote:
>>
>> >   Are you passing a count of 0? That’s probably what MPT is getting
>> caught on. I can have a fix for you to try in a few minutes if so.
>> >
>> > Michael A. Raymond
>> > SGI MPT Team Leader
>> > 1 (651) 683-7523
>> >
>> >
>> >
>> >> On Sep 21, 2016, at 12:26, Jim Edwards <jedwards at ucar.edu> wrote:
>> >>
>> >> Trying to use parallel netcdf on an SGI system with mpi/2.14 I am
>> getting the following error:
>> >>
>> >> MPT ERROR: rank:10, function:MPI_TYPE_CREATE_HVECTOR, Invalid argument
>> >>
>> >> with a traceback:
>> >>
>> >> MPT: #7  0x00002aaaaf46dd2a in PMPI_Type_create_hindexed
>> (count=<optimized out>,
>> >>
>> >> MPT:     blocklens=0x0, indices=0xbf71470, oldtype=27,
>> newtype=0x7fffffff5588)
>> >>
>> >> MPT:     at type_create_hindexed.c:23
>> >>
>> >> MPT: #8  0x0000000000cc01ac in fillerup_aggregate (ncp=0x4ff9,
>> >>
>> >> MPT:     old_ncp=0x7fffffff4990) at fill.c:727
>> >>
>> >> MPT: #9  0x0000000000cb5141 in ncmpii_NC_enddef (ncp=0x4ff9,
>> >>
>> >> MPT:     h_align=140737488308624, h_minfree=0, v_align=-1,
>> v_minfree=20438,
>> >>
>> >> MPT:     r_align=0) at nc.c:1187
>> >>
>> >> MPT: #10 0x0000000000cb42fb in ncmpii_enddef (ncp=0x4ff9) at nc.c:1318
>> >>
>> >>
>> >> MPT: #11 0x0000000000ca8d7f in ncmpi_enddef (ncid=20473) at
>> mpinetcdf.c:806
>> >>
>> >>
>> >>
>> >> Have you seen this before or have an idea of a fix?
>> >>
>> >>
>> >>
>> >> Thanks,
>> >>
>> >>
>> >>
>> >>
>> >> --
>> >> Jim Edwards
>> >>
>> >> CESM Software Engineer
>> >> National Center for Atmospheric Research
>> >> Boulder, CO
>> >
>>
>>
>
>
> --
> Jim Edwards
>
> CESM Software Engineer
> National Center for Atmospheric Research
> Boulder, CO
>



-- 
Jim Edwards

CESM Software Engineer
National Center for Atmospheric Research
Boulder, CO
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