pnetcdf-1.7.0 and MPT

Wei-keng Liao wkliao at eecs.northwestern.edu
Wed Sep 21 12:50:23 CDT 2016


Hi, Jim, Michael

Eric Kemp @ NASA/GSFC also encountered a similar error message.
http://lists.mcs.anl.gov/pipermail/parallel-netcdf/2016-June/001854.html

It seems like he was able to solve the problem by trying the build recipe
in README.SGI. Let me know whether this works for you.

Wei-keng

On Sep 21, 2016, at 12:36 PM, Michael Raymond wrote:

>   Are you passing a count of 0? That’s probably what MPT is getting caught on. I can have a fix for you to try in a few minutes if so.
> 
> Michael A. Raymond
> SGI MPT Team Leader
> 1 (651) 683-7523
> 
> 
> 
>> On Sep 21, 2016, at 12:26, Jim Edwards <jedwards at ucar.edu> wrote:
>> 
>> Trying to use parallel netcdf on an SGI system with mpi/2.14 I am getting the following error:
>> 
>> MPT ERROR: rank:10, function:MPI_TYPE_CREATE_HVECTOR, Invalid argument
>> 
>> with a traceback:
>> 
>> MPT: #7  0x00002aaaaf46dd2a in PMPI_Type_create_hindexed (count=<optimized out>, 
>> 
>> MPT:     blocklens=0x0, indices=0xbf71470, oldtype=27, newtype=0x7fffffff5588)
>> 
>> MPT:     at type_create_hindexed.c:23
>> 
>> MPT: #8  0x0000000000cc01ac in fillerup_aggregate (ncp=0x4ff9, 
>> 
>> MPT:     old_ncp=0x7fffffff4990) at fill.c:727
>> 
>> MPT: #9  0x0000000000cb5141 in ncmpii_NC_enddef (ncp=0x4ff9, 
>> 
>> MPT:     h_align=140737488308624, h_minfree=0, v_align=-1, v_minfree=20438, 
>> 
>> MPT:     r_align=0) at nc.c:1187
>> 
>> MPT: #10 0x0000000000cb42fb in ncmpii_enddef (ncp=0x4ff9) at nc.c:1318
>> 
>> 
>> MPT: #11 0x0000000000ca8d7f in ncmpi_enddef (ncid=20473) at mpinetcdf.c:806
>> 
>> 
>> 
>> Have you seen this before or have an idea of a fix?
>> 
>> 
>> 
>> Thanks,
>> 
>> 
>> 
>> 
>> -- 
>> Jim Edwards
>> 
>> CESM Software Engineer
>> National Center for Atmospheric Research
>> Boulder, CO 
> 



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