Unable to pass all the tests with pnetcdf 1.6.1, Intel 15.0.3.048 and Mvapich2 2.1

Craig Tierney - NOAA Affiliate craig.tierney at noaa.gov
Fri Sep 18 16:57:44 CDT 2015


Hello,

I am trying to build Pnetcdf 1.6.1 with Intel 15.0.3.048 and Mvapich2 2.1.
I am getting some failures in the tests.  I so far am getting 4 failures.
The flash-io test fails and the make process exits.  When I build Pnetcdf
1.6.1 with Intel 15.0.3.048 and Intel MPI 5.1.1.109, all tests complete
cleanly.

Are there known issues with Pnetcdf 1.6.1 and Mvapich2 2.1?

Thanks,
Craig

---------------
./nc_test -d       /lfs3/jetmgmt/Craig.Tierney

FAILURE at line 112 of test_read.c: ncmpi_open of non-netCDF file: status =
-220
### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###

./nc_test: expects 0 failures ... Total number of failures: 1
*** TESTING C   ./nc_test for format CDF-1                         ------
failed

--------------
And:

-------------
*** TESTING C   ./varn_int for ncmpi_put_varn_int_all()            ------
pass
Error: expect error code -220 but got -51
Error: expect error code -220 but got -51
Error: expect error code -220 but got -51
Error: expect error code -220 but got -51
*** TESTING C   ./modes for file create/open modes                 ------
failed
*** TESTING C   ./one_record for only one record variable          ------
pass

----------------

Also:

---------------
Error at line=71: NetCDF: Not a valid ID
Error at line=72: NetCDF: Not a valid ID
Error at line=69: NetCDF: Not a valid ID
Error at line=71: NetCDF: Not a valid ID
Error at line=72: NetCDF: Not a valid ID
*** TESTING C   ./wait_after_indep for ncmpi_end_indep_data        ------
fail

----------
Lastly:

make -w -C FLASH-IO ptest
make[2]: Entering directory
`/misc/whome/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2/benchmarks/FLASH-IO'
mpiexec.hydra -np 4 ./flash_benchmark_io
/lfs3/jetmgmt/Craig.Tierney/flash_io_test_
 nfmpi_enddef
 (Internal error) beginning file offset of this variable is inconsistent
among p
 r
 nfmpi_enddef
 (Internal error) beginning file offset of this variable is inconsistent
among p
 r
 nfmpi_enddef
 (Internal error) beginning file offset of this variable is inconsistent
among p
 r
[cli_1]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 1
[cli_2]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 2
[cli_3]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 9284 RUNNING AT fe1
=   EXIT CODE: 255
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
make[2]: *** [ptest] Error 255
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