input/output errors from "make check"
Carl Ponder
cponder at nvidia.com
Wed May 27 17:41:17 CDT 2015
I'm building HPC tools on a shared cluster, and trying to "bulletproof"
them as much as possible by enabling all the capabilities and running
all the built-in validation tests.
In this case I'm building PNetCDF 1.6.0 using OpenMPI 1.8.5 and GCC/5.1.0.
Here are some oddities from the "make check" that I ran:
./nf_test -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F77 ./nf_test for CDF-1
------ pass
./nf_test -c -2 -d .
./nf_test -2 -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F77 ./nf_test for CDF-2
------ pass
./nf_test -c -5 -d .
./nf_test -5 -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F77 ./nf_test for CDF-5
------ pass
./nf90_test -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F90 ./nf90_test for CDF-1
------ pass
./nf90_test -c -2 -d .
./nf90_test -2 -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F90 ./nf90_test for CDF-2
------ pass
./nf90_test -c -5 -d .
./nf90_test -5 -d .
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
rank 0: MPI error (MPI_File_delete) : MPI_ERR_IO: input/output error
*** TESTING F90 ./nf90_test for CDF-5
------ pass
So the tests are listed as passing, but the messages indicate that an
error had occurred.
Are there any global MPI settings that I need to make in order for these
tests to work?
Or did these tests really run OK?
Also when I used the PGI 15.5 compiler instead of the GCC compiler, I
got similar messages on the F77 tests.
But when it started the first F90 test, it hanged.
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