Make installation error

[Shawn Kim]

Hi, all

Now I can compile it. Sorry about bothering.
Thank you for your help.


On Thu, Jan 21, 2010 at 12:24 PM, Shawn Kim <shawn.subscribe at gmail.com>wrote:

> Hi, Wei-keng
>
> I set environment variables:
>
> setenv CC     gcc
> setenv CXX    g++
> setenv FC     gfortran
> setenv F90    gfortran
> setenv MPICC  mpicc
> setenv MPICXX mpicxx
> setenv MPIF77 mpif77
> setenv MPIF90 mpif90
> setenv CFLAGS "-g"
> setenv FFLAGS "-g"
>
> I also check the /tmp which has enough space, and time skew mentioned in
> the previous thread. Both are fine. The new error message is same except
> time skew. What else do I have to do?
>
> Thank you
>
>
> On Wed, Jan 20, 2010 at 11:52 PM, Wei-keng Liao <
> wkliao at ece.northwestern.edu> wrote:
>
>> Hi, Shawn,
>>
>> I notice another problem: mpif77 was used to compile pnetcdf.F90.
>>
>> Did you set the environment variables F90 and MPIF90 to the
>> MPI Fortran 90 compiler, such as mpif90, when you ran configure?
>>
>> Wei-keng
>>
>>
>> On Jan 20, 2010, at 10:30 PM, Jim Edwards wrote:
>>
>>  I see two problems - the first is that it looks like there is a time skew
>>> between your os and the filesystem - try using a different filesystem or a
>>> different make tool.   The second is that your /tmp is running out of space
>>> - look in your compiler documentation to see how to change the directory it
>>> uses for temporary files.
>>>
>>>
>>>
>>>
>>>
>>> On Wed, Jan 20, 2010 at 9:18 PM, Shawn Kim <shawn.subscribe at gmail.com>
>>> wrote:
>>> Hi,
>>>
>>> I am currently using mpich2-1.2 + pvfs-2.8.1 and trying to install
>>> pnetcdf-1.1.0.
>>> I modified rules.make in pnetcdf-1.1.0 and Makefile in
>>> pnetcdf-1.1.0/src/libf. But I didn't add new functions because our cluster
>>> doesn't support svn yet.
>>>
>>> When "make install", the error occurred:
>>>
>>> $ make install
>>> make[1]: Entering directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0'
>>>
>>> Making `install' in directory
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src
>>>
>>> make[2]: Entering directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src'
>>> cd lib && make install
>>> make[3]: Entering directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/lib'
>>> /usr/bin/install -c -d -m 755
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/lib
>>> /usr/bin/install -c -m 644 libpnetcdf.a
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/lib/libpnetcdf.a
>>> /usr/bin/install -c -d -m 755
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include
>>> /usr/bin/install -c -m 644 ./pnetcdf.h
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include/pnetcdf.h
>>> /usr/bin/install -c -d -m 755
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/man/man3
>>> /usr/bin/install -c -m 644 pnetcdf.3
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/man/man3/pnetcdf.3
>>> /usr/bin/install -c -d
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/bin
>>> /usr/bin/install -c -m 755 ncvalid
>>> /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/bin/ncvalid
>>> make[3]: Leaving directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/lib'
>>> if [ yes = yes ] ; then cd libf && make install ; fi
>>> make[3]: Entering directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/libf'
>>> make[3]: Warning: File
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include' has
>>> modification time 4.4 s in the future
>>> /bin/rm -f pnetcdf.F90
>>> echo "module pnetcdf" > pnetcdf.F90
>>> /bin/cat pnetcdf.inc >> pnetcdf.F90
>>> /home/mdl/seokim/io_newest/mpich2-1.2.1/bin/mpif77 -c -g -I. -I./../lib
>>> -I../lib   -c pnetcdf.F90
>>> Error: Unexpected end of file in '/tmp/ccFpAkMf.f95'
>>> make[3]: *** [pnetcdf.mod] Error 1
>>> make[3]: Leaving directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/libf'
>>> make[2]: *** [install] Error 2
>>> make[2]: Leaving directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src'
>>> make[1]: *** [subdir_target] Error 1
>>> make[1]: Leaving directory
>>> `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0'
>>> make: *** [src/lib/install] Error 2
>>>
>>> Is there anybody who faced with this kind of problem and solved it?
>>> Could you give me any suggestion?
>>>
>>>
>>>
>>
>
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