Hi, all<br><br>Now I can compile it. Sorry about bothering.<br>Thank you for your help.<br><br><br><div class="gmail_quote">On Thu, Jan 21, 2010 at 12:24 PM, Shawn Kim <span dir="ltr"><<a href="mailto:shawn.subscribe@gmail.com">shawn.subscribe@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi, Wei-keng<br><br>I set environment variables:<br><br>setenv CC gcc <br>setenv CXX g++<br>
setenv FC gfortran<br>setenv F90 gfortran<br>setenv MPICC mpicc<br>setenv MPICXX mpicxx<br>setenv MPIF77 mpif77<br>
setenv MPIF90 mpif90<br>setenv CFLAGS "-g"<br>setenv FFLAGS "-g"<br><br>I also check the /tmp which has enough space, and time skew mentioned in the previous thread. Both are fine. The new error message is same except time skew. What else do I have to do?<br>
<br>Thank you<div><div></div><div class="h5"><br><br><div class="gmail_quote">On Wed, Jan 20, 2010 at 11:52 PM, Wei-keng Liao <span dir="ltr"><<a href="mailto:wkliao@ece.northwestern.edu" target="_blank">wkliao@ece.northwestern.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi, Shawn,<br>
<br>
I notice another problem: mpif77 was used to compile pnetcdf.F90.<br>
<br>
Did you set the environment variables F90 and MPIF90 to the<br>
MPI Fortran 90 compiler, such as mpif90, when you ran configure?<br><font color="#888888">
<br>
Wei-keng</font><div><div></div><div><br>
<br>
On Jan 20, 2010, at 10:30 PM, Jim Edwards wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I see two problems - the first is that it looks like there is a time skew between your os and the filesystem - try using a different filesystem or a different make tool. The second is that your /tmp is running out of space - look in your compiler documentation to see how to change the directory it uses for temporary files.<br>
<br>
<br>
<br>
<br>
<br>
On Wed, Jan 20, 2010 at 9:18 PM, Shawn Kim <<a href="mailto:shawn.subscribe@gmail.com" target="_blank">shawn.subscribe@gmail.com</a>> wrote:<br>
Hi,<br>
<br>
I am currently using mpich2-1.2 + pvfs-2.8.1 and trying to install pnetcdf-1.1.0.<br>
I modified rules.make in pnetcdf-1.1.0 and Makefile in pnetcdf-1.1.0/src/libf. But I didn't add new functions because our cluster doesn't support svn yet.<br>
<br>
When "make install", the error occurred:<br>
<br>
$ make install<br>
make[1]: Entering directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0'<br>
<br>
Making `install' in directory /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src<br>
<br>
make[2]: Entering directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src'<br>
cd lib && make install<br>
make[3]: Entering directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/lib'<br>
/usr/bin/install -c -d -m 755 /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/lib<br>
/usr/bin/install -c -m 644 libpnetcdf.a /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/lib/libpnetcdf.a<br>
/usr/bin/install -c -d -m 755 /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include<br>
/usr/bin/install -c -m 644 ./pnetcdf.h /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include/pnetcdf.h<br>
/usr/bin/install -c -d -m 755 /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/man/man3<br>
/usr/bin/install -c -m 644 pnetcdf.3 /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/man/man3/pnetcdf.3<br>
/usr/bin/install -c -d /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/bin<br>
/usr/bin/install -c -m 755 ncvalid /home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/bin/ncvalid<br>
make[3]: Leaving directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/lib'<br>
if [ yes = yes ] ; then cd libf && make install ; fi<br>
make[3]: Entering directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/libf'<br>
make[3]: Warning: File `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/install/include' has modification time 4.4 s in the future<br>
/bin/rm -f pnetcdf.F90<br>
echo "module pnetcdf" > pnetcdf.F90<br>
/bin/cat pnetcdf.inc >> pnetcdf.F90<br>
/home/mdl/seokim/io_newest/mpich2-1.2.1/bin/mpif77 -c -g -I. -I./../lib -I../lib -c pnetcdf.F90<br>
Error: Unexpected end of file in '/tmp/ccFpAkMf.f95'<br>
make[3]: *** [pnetcdf.mod] Error 1<br>
make[3]: Leaving directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src/libf'<br>
make[2]: *** [install] Error 2<br>
make[2]: Leaving directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0/src'<br>
make[1]: *** [subdir_target] Error 1<br>
make[1]: Leaving directory `/home/mdl/seokim/io_newest/test/parallel-netcdf-1.1.0'<br>
make: *** [src/lib/install] Error 2<br>
<br>
Is there anybody who faced with this kind of problem and solved it?<br>
Could you give me any suggestion?<br>
<br>
<br>
</blockquote>
<br>
</div></div></blockquote></div><br>
</div></div></blockquote></div><br>