Problems building
Luis Cebamanos
luiceur at gmail.com
Thu Jan 29 05:26:43 CST 2009
Hi there,
I am trying to build the binaries but I got an error.Trying to build
pnetcdf on my laptop Ubuntu i got this:
luis at bbc:~/documents/parallel-netcdf-1.0.3$ ./configure
--prefix=/usr/bin --with-mpi=/usr/
checking for top-level source-directory...
/home/luis/documents/parallel-netcdf-1.0.3
checking for gcc...
gcc
checking for C compiler default output file name...
a.out
checking whether the C compiler works...
yes
checking whether we are cross compiling...
no
checking for suffix of
executables...
checking for suffix of object files...
o
checking whether we are using the GNU C compiler...
yes
checking whether gcc accepts -g...
yes
checking for gcc option to accept ISO C89... none
needed
checking how to run the C preprocessor... gcc
-E
checking for grep that handles long lines and -e...
/bin/grep
checking for egrep... /bin/grep
-E
checking for ANSI C header files...
yes
checking for a BSD-compatible install... /usr/bin/install
-c
checking for bison...
no
checking for byacc...
no
checking for flex...
no
checking for lex...
no
configure: checking for m4
preprocessor...
checking for m4...
no
checking for gm4...
no
checking m4 flags...
-B10000
checking for gcc... (cached)
gcc
checking whether we are using the GNU C compiler... (cached)
yes
checking whether gcc accepts -g... (cached)
yes
checking for gcc option to accept ISO C89... (cached) none
needed
checking for pgf90...
no
checking for f77...
f77
checking for Fortran .F
compiler...
checking if Fortran-77 compiler handles *.F files...
yes
checking how to make dependencies...
false
configure: checking for nm
utility...
checking for nm...
nm
checking nm
flags...
checking for C-equivalent to Fortran routine "SUB"...
sub_
configure: checking for math
library...
checking for tanh in -lc...
no
checking for tanh in -lm...
yes
configure: checking for ar
utility...
checking for ar...
ar
checking ar flags...
cru
configure: checking for nm
utility...
checking for nm... (cached)
nm
checking nm
flags...
checking for ranlib...
ranlib
checking for C-equivalent to Fortran routine "SUB_A"...
sub_a__
checking mpi implementation... using
/usr/
checking MPI-IO support in MPI implementation...
yes
checking for sys/types.h...
yes
checking for sys/stat.h...
yes
checking for stdlib.h...
yes
checking for string.h...
yes
checking for memory.h...
yes
checking for strings.h...
yes
checking for inttypes.h...
yes
checking for stdint.h...
yes
checking for unistd.h...
yes
checking for stdlib.h... (cached)
yes
checking for sys/types.h... (cached)
yes
checking mpio.h usability...
no
checking mpio.h presence...
no
checking for mpio.h...
no
checking for strerror...
yes
checking for working alloca.h...
yes
checking for alloca...
yes
checking for struct stat.st_blksize...
yes
checking for IEEE floating point format...
yes
checking for size_t...
yes
checking if MPI_Offset is size 8...
yes
checking for MPI_Request_get_status...
yes
checking for MPI_Type_dup...
yes
checking for MPI_Info_dup...
yes
checking if MPI includes MPI_COMBINER_DUP...
yes
checking if MPI includes MPI_COMBINER_HVECTOR_INTEGER...
yes
checking if MPI includes MPI_COMBINER_HINDEXED_INTEGER...
yes
checking if MPI includes MPI_COMBINER_SUBARRAY...
yes
checking if MPI includes MPI_COMBINER_DARRAY...
yes
checking if MPI includes MPI_COMBINER_RESIZED...
yes
checking if MPI includes MPI_COMBINER_STRUCT_INTEGER...
yes
checking if MPI includes MPI_COMBINER_INDEXED_BLOCK...
yes
checking if MPI includes MPI_COMBINER_F90_REAL...
yes
checking if MPI includes MPI_COMBINER_F90_INTEGER...
yes
checking if MPI includes MPI_COMBINER_F90_COMPLEX...
yes
checking if MPI includes MPI_CHARACTER...
yes
checking if MPI includes MPI_REAL...
yes
checking if MPI includes MPI_INTEGER...
yes
checking if MPI includes MPI_DOUBLE_PRECISION...
yes
checking if MPI includes MPI_INTEGER1...
yes
checking if MPI includes MPI_INTEGER2...
yes
checking if MPI includes MPI_INTEGER4...
yes
checking if MPI includes MPI_INTEGER8...
yes
checking if MPI includes MPI_INTEGER16...
no
checking if MPI includes MPI_REAL4...
yes
checking if MPI includes MPI_REAL8...
yes
checking if MPI includes MPI_REAL16...
no
checking if MPI includes MPI_COMPLEX8...
yes
checking if MPI includes MPI_COMPLEX16...
yes
checking if MPI includes MPI_COMPLEX32...
no
checking if MPI includes MPI_UB...
yes
checking if MPI includes MPI_LB...
yes
checking for off_t...
yes
checking for ssize_t...
yes
checking for ptrdiff_t...
yes
checking for uchar...
no
checking whether char is unsigned...
no
checking whether byte ordering is bigendian...
no
checking for short...
yes
checking size of short...
2
checking for int...
yes
checking size of int...
4
checking for long...
yes
checking size of long...
4
checking for float...
yes
checking size of float...
4
checking for double...
yes
checking size of double...
8
checking for size_t... (cached)
yes
checking size of size_t...
4
checking sizeof MPI_Offset... (cached)
8
checking for Fortran "byte"... yes
checking for Fortran "integer*2"... yes
checking if Fortran "byte" is C "signed char"... yes
checking if Fortran "byte" is C "short"... no
checking if Fortran "byte" is C "int"... no
checking if Fortran "byte" is C "long"... no
checking if Fortran "integer*2" is C "short"... yes
checking if Fortran "integer*2" is C "int"... no
checking if Fortran "integer*2" is C "long"... no
checking if Fortran "integer" is C "int"... yes
checking if Fortran "real" is C "float"... yes
checking if Fortran "doubleprecision" is C "double"... yes
checking for Fortran-equivalent to netCDF "byte"... byte
checking for Fortran-equivalent to netCDF "short"... integer*2
checking for Fortran "integer*8"... no
configure: error: F77 does not support "integer*8"
Could you please help me out?
Best regards,
Luis Cebamanos
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