Compile pnetcdf library at a new Linux cluster at NERSC

[Yu-Heng Tseng]

Hi,

I couldn't compile the library using "pathf90/pathcc" compiler. It 
gives me the following error during "gmake". It seems "MPI_Type_dup" 
is not defined. A bug in the compiler or the library?

mpicc -o ncmpigen -g -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  
main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o -
L../../../src/lib -lpnetcdf  
../../../src/lib/libpnetcdf.a(mpinetcdf.o)(.text+0x1041d): In function 
`ncmpi_request_get_status':
/scratch/scratchdirs/yhtseng/cam_PIO/CAMMODELS/parallel-netcdf-
1.0.1/src/lib/mpinetcdf.c:8218: undefined reference to 
`MPI_Request_get_status'
../../../src/lib/libpnetcdf.a(mpinetcdf.o)(.text+0x10cf4): In function 
`ncmpi_iget_var1':
/scratch/scratchdirs/yhtseng/cam_PIO/CAMMODELS/parallel-netcdf-
1.0.1/src/lib/mpinetcdf.c:8528: undefined reference to `MPI_Type_dup'

---------------------------------------------------
Yu-Heng Tseng

Computational Research Division
Lawrence Berkeley National Laboratory
One Cyclotron Rd, MS: 50F-1650
Berkeley, CA94720
YHTseng at lbl.gov
510.495.2904

----- Original Message -----
From: Jim Edwards <jedwards at ucar.edu>
Date: Tuesday, December 6, 2005 0:40 am
Subject: Re: Compile pnetcdf library in IBM SP at NCAR

> There is a pnetcdf version installed in the /contrib file system 
> on the NCAR
> IBM machines.  I have already reported this problem with configure 
> to the
> parallel netcdf developers.   They have provided a patched release to
> address the problem.
> 
> Jim Edwards
> IBM applications support
> NCAR
> 
> On 12/6/05, Yu-Heng Tseng <YHTseng at lbl.gov> wrote:
> >
> > Hi,
> >
> > I couldn't compile the library in NCAR's IBM SP.
> > It works fine in NERSC's IBM SP machine.
> > I am not sure if this is compiler's or the library's problem.
> > When I tried to "./configure" the
> > it stops at the following line
> >
> > checking for Fortran-equivalent to netCDF "byte"... byte
> > checking for Fortran-equivalent to netCDF "short"... integer*2
> > checking for Fortran "integer*"... no
> > configure: error: F77 does not support "integer*"
> >
> > The "integer*" is actually "integer8" in a successful check.
> >
> > Anyone has clues to solve the problem? The c compiler at NCAR
> > seems different from that at NERSC.
> > NCAR uses  VisualAge C++ Professional / C for AIX Compiler, 
> Version 6
> >
> > Thanks a lot for your help!
> >
> > Yu-heng
> > ---------------------------------------------------
> > Yu-Heng Tseng
> >
> > Computational Research Division
> > Lawrence Berkeley National Laboratory
> > One Cyclotron Rd, MS: 50F-1650
> > Berkeley, CA94720
> > YHTseng at lbl.gov
> > 510.495.2904
> >
> >
>