[mpich-discuss] Newbie getting started question?

John Chludzinski john.chludzinski at gmail.com
Fri Sep 14 18:57:26 CDT 2012 

$ ls -l /usr/lib/mpich2/lib
total 6412
-rw-r--r--. 1 root root   25459 Jan  2  2012 clog2print.jar
-rw-r--r--. 1 root root  127339 Jan  2  2012 clog2TOdrawable.jar
-rw-r--r--. 1 root root  183747 Jan  2  2012 clog2TOslog2.jar
-rw-r--r--. 1 root root   17400 Jan  2  2012 clogprint.jar
-rw-r--r--. 1 root root  108290 Jan  2  2012 clogTOdrawable.jar
-rw-r--r--. 1 root root  164701 Jan  2  2012 clogTOslog2.jar
-rw-r--r--. 1 root root 2449314 Jan  2  2012 jumpshot.jar
-rw-r--r--. 1 root root    7140 Jan  2  2012 jumpshot_launcher.jar
lrwxrwxrwx. 1 root root      16 Sep 14 16:20 libfmpich.so.3 ->
libfmpich.so.3.3
-rwxr-xr-x. 1 root root  121604 Jan  2  2012 libfmpich.so.3.3
lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichcxx.so.3 ->
libmpichcxx.so.3.3
-rwxr-xr-x. 1 root root  116756 Jan  2  2012 libmpichcxx.so.3.3
lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichf90.so.3 ->
libmpichf90.so.3.3
-rwxr-xr-x. 1 root root    5644 Jan  2  2012 libmpichf90.so.3.3
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpich.so.3 ->
libmpich.so.3.3
-rwxr-xr-x. 1 root root 1861652 Jan  2  2012 libmpich.so.3.3
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpl.so.1 -> libmpl.so.1.1.0
-rwxr-xr-x. 1 root root   15612 Jan  2  2012 libmpl.so.1.1.0
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libopa.so.1 -> libopa.so.1.0.0
-rwxr-xr-x. 1 root root    3940 Jan  2  2012 libopa.so.1.0.0
-rw-r--r--. 1 root root  265485 Jan  2  2012 logconvertor.jar
-rw-r--r--. 1 root root   10760 Jan  2  2012 mpe_prof.o
-rw-r--r--. 1 root root  173622 Jan  2  2012 slog2filter.jar
-rw-r--r--. 1 root root  136084 Jan  2  2012 slog2navigator.jar
-rw-r--r--. 1 root root  136091 Jan  2  2012 slog2printrecur.jar
-rw-r--r--. 1 root root  136086 Jan  2  2012 slog2printserial.jar
-rw-r--r--. 1 root root  261610 Jan  2  2012 slog2update205to206.jar
-rw-r--r--. 1 root root   67742 Jan  2  2012 traceprint.jar
-rw-r--r--. 1 root root  124160 Jan  2  2012 traceTOslog2.jar


$ mpif90 -show
gfortran -m32 -O2 -fPIC -Wl,-z,noexecstack -I/usr/include/mpich2-i386
-I/usr/include/mpich2-i386 -L/usr/lib/mpich2/lib -lmpichf90 -lmpichf90
-lmpich

On Fri, Sep 14, 2012 at 7:54 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:

> On Fri, Sep 14, 2012 at 6:41 PM, John Chludzinski <
> john.chludzinski at gmail.com> wrote:
>
>> MPICH2 Version:        1.4.1p1
>> MPICH2 Release date:    Thu Sep  1 13:53:02 CDT 2011
>> MPICH2 Device:        ch3:nemesis
>> MPICH2 configure:     --build=i386-redhat-linux-gnu
>> --host=i386-redhat-linux-gnu --program-prefix=
>> --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr
>> --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc
>> --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib
>> --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib
>> --mandir=/usr/share/man --infodir=/usr/share/info --enable-sharedlibs=gcc
>> --enable-shared --enable-lib-depend --disable-rpath
>
>
> Because of this option, you will need LD_LIBRARY_PATH=/usr/lib/mpich2/lib
> to run executables.
>
>
>> --enable-fc --with-device=ch3:nemesis --with-pm=hydra:gforker
>> --sysconfdir=/etc/mpich2-i386 --includedir=/usr/include/mpich2-i386
>> --bindir=/usr/lib/mpich2/bin --libdir=/usr/lib/mpich2/lib
>
>
> According to the output you showed above, this option was either missed or
> the distribution packaged it differently on install. What system is this
> on? What is the output of
>
> $ ls -l /usr/lib/mpich2/lib
>
> $ mpif90 -show
>
>
>> --datadir=/usr/share/mpich2 --mandir=/usr/share/man/mpich2
>> --docdir=/usr/share/mpich2/doc --htmldir=/usr/share/mpich2/doc
>> --with-hwloc-prefix=system --with-java=/etc/alternatives/java_sdk
>> FC=gfortran F77=gfortran CFLAGS=-m32 -O2 -fPIC CXXFLAGS=-m32 -O2 -fPIC
>> FCFLAGS=-m32 -O2 -fPIC FFLAGS=-m32 -O2 -fPIC LDFLAGS=-Wl,-z,noexecstack
>> MPICH2LIB_CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
>> -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables MPICH2LIB_CXXFLAGS=-O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables MPICH2LIB_FCFLAGS=-O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables MPICH2LIB_FFLAGS=-O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables
>> MPICH2 CC:     gcc -m32 -O2 -fPIC -O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables  -O2
>> MPICH2 CXX:     c++ -m32 -O2 -fPIC -O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables -O2
>> MPICH2 F77:     gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables -O2
>> MPICH2 FC:     gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>> -fasynchronous-unwind-tables -O2
>>
>>
>> On Fri, Sep 14, 2012 at 7:31 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:
>>
>>> On Fri, Sep 14, 2012 at 6:23 PM, John Chludzinski <
>>> john.chludzinski at gmail.com> wrote:
>>>
>>>> Why is this installation of MPICH2 ("compiler wrapper") trying to
>>>> statically link against "mpichf90" and "mpich" ? Versus dynamically link
>>>> against the shared object files in the lib directory.
>>>>
>>>
>>> It's not trying to "statically link", it's just trying to link. The
>>> correct path is not being specified, but we'd have to see output of
>>> mpich2version to say for sure. It's a waste of time to speculate.
>>>
>>>
>>>>
>>>> How do I get the compiler wrapper to recognize this ?
>>>>
>>>> I assume I need to define: LD_LIBRARY_PATH=/usr/lib/mpich2/lib/ ?
>>>>
>>>
>>> This problem comes sooner.
>>>
>>> _______________________________________________
>>> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
>>> To manage subscription options or unsubscribe:
>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>
>>>
>>
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>>
>
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