[mpich-discuss] linking error in moab

[Jed Brown]

[Resending from the address that is subscribed to this list.]

On Mon, Jun 4, 2012 at 7:02 PM, Jed Brown <jed at 59a2.org> wrote:

> Please send output of mpich2version and mpicxx -show.
>
> Does this occur with simpler programs or only with the example below?
>
>
> On Mon, Jun 4, 2012 at 6:55 PM, Iulian Grindeanu <iulian at mcs.anl.gov>wrote:
>
>> Hello,
>> I am trying to compile moab on my laptop, ubuntu 12.04, and I am getting
>> this error in make check
>>
>>
>> link: mpicxx -O0 -g -Wall -pipe -pedantic -Wno-long-long -g -o
>> test_prog_opt test_prog_opt-test_prog_opt.o
>> -L/home/iulian/3rdparty/netcdf-par/lib
>> -L/home/iulian/3rdparty/hdf5-1.8.8-par-gcc/lib
>> -L/home/iulian/lib/parallel/cgmcubit/lib
>> -L/home/iulian/3rdparty/Cubit-12.2/bin ../src/.libs/libMOAB.a
>> /home/iulian/3rdparty/netcdf-par/lib/libnetcdf.so
>> -L/home/iulian/3rdparty/zlib-1.2.4/gcc/lib
>> -L/home/iulian/3rdparty/szip-2.1-gcc/lib
>> /home/iulian/3rdparty/hdf5-1.8.8-par-gcc/lib/libhdf5_hl.so
>> /home/iulian/3rdparty/hdf5-1.8.8-par-gcc/lib/libhdf5.so
>> /home/iulian/3rdparty/szip-2.1-gcc/lib/libsz.so -lz
>> /home/iulian/lib/parallel/cgmcubit/lib/libcgm.so -lcubiti19
>> /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/iulian/3rdparty/netcdf-par/lib
>> -Wl,-rpath -Wl,/home/iulian/3rdparty/hdf5-1.8.8-par-gcc/lib -Wl,-rpath
>> -Wl,/home/iulian/3rdparty/szip-2.1-gcc/lib -Wl,-rpath
>> -Wl,/home/iulian/lib/parallel/cgmcubit/lib -Wl,-rpath
>> -Wl,/home/iulian/3rdparty/netcdf-par/lib -Wl,-rpath
>> -Wl,/home/iulian/3rdparty/hdf5-1.8.8-par-gcc/lib -Wl,-rpath
>> -Wl,/home/iulian/3rdparty/szip-2.1-gcc/lib -Wl,-rpath
>> -Wl,/home/iulian/lib/parallel/cgmcubit/lib -Wl,-rpath
>> -Wl,/home/iulian/3rdparty/Cubit-12.2/bin
>> /usr/lib/libmpich.so: undefined reference to `MPL_trfree'
>> /usr/lib/libmpich.so: undefined reference to `MPL_env2str'
>> /usr/lib/libmpich.so: undefined reference to `MPL_trlevel'
>> /usr/lib/libmpich.so: undefined reference to `MPL_trvalid'
>> ....
>>
>> I found online this reference to a similar error.
>> http://lists.mcs.anl.gov/pipermail/mpich-discuss/2010-November/008397.html
>>
>> http://lists.mcs.anl.gov/pipermail/mpich-discuss/2010-November/008456.html
>>
>> I installed mpich2 from the binary installation, using ubuntu software
>> center.(from here, latest stable release:
>> http://www.mcs.anl.gov/research/projects/mpich2/downloads/index.php?s=downloads
>> )
>>
>> I also tried compiling myself mpich2 from source, but I get the same
>> linking error. Also, that small example from Jed gives the same error, with
>> both versions (one installed from binary, and one compiled by me)
>>
>> Any clues how to fix my installation, or what I did wrong? Where should I
>> start looking?  The configure.in change that seemed to fix the issues in
>> 1.3.1 is already part of 1.4.1.
>>
>> Also, it seems that some symbols with those names are part of  libmpl.a,
>> on my laptop
>>  .. iulian at T520-iuli:/usr/lib$ nm -C libmpl.a | grep MPL_
>> 0000000000000000 T MPL_strncpy
>> 0000000000000070 T MPL_strsep
>> 0000000000001120 T MPL_TrSetMaxMem
>>                  U MPL_strncpy
>> 0000000000000d80 T MPL_trDebugLevel
>> 0000000000000000 t MPL_trIsort
>> 0000000000000d20 T MPL_trSummary
>> 0000000000000d90 T MPL_trcalloc
>> 0000000000000bf0 T MPL_trdump
>> 0000000000000fd0 T MPL_trdumpGrouped
>> 00000000000004f0 T MPL_trfree
>> 0000000000000d50 T MPL_trid
>> 0000000000000100 T MPL_trinit
>> 0000000000000d70 T MPL_trlevel
>> 0000000000000930 T MPL_trmalloc
>> 0000000000000de0 T MPL_trrealloc
>> 0000000000000bd0 T MPL_trspace
>> 0000000000000f60 T MPL_trstrdup
>> 00000000000002b0 T MPL_trvalid
>> 0000000000000260 T MPL_env2bool
>> 0000000000000130 T MPL_env2int
>> 0000000000000000 T MPL_env2range
>> 00000000000003d0 T MPL_env2str
>> 00000000000003f0 T MPL_putenv
>>
>> Thanks,
>> Iulian
>>
>
>
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