[mpich-discuss] Fwd: Installation error in ubuntu
Balaji S
balaji.ceg.13 at gmail.com
Wed Feb 22 12:13:38 CST 2012
HI
ya thanks for rectifying it.. i had some permission problems... i
rectified it.. and configured successfully.
Now i hav some problems in "make" dono what it is...
Please find the attached m.txt file sir.
thanks..
On Wed, Feb 22, 2012 at 11:06 PM, Anthony Chan <chan at mcs.anl.gov> wrote:
>
> Your c.txt contains these 2 lines:
>
> configure: ===== configuring src/mpl =====
> configure: WARNING: /home/balaji/fyp/mpich2-1.4.1p1/src/mpl/configure
> exists but is not executable
> configure: ===== done with src/mpl configure =====
> configure: ===== configuring src/openpa =====
> configure: WARNING: /home/balaji/fyp/mpich2-1.4.1p1/src/openpa/configure
> exists but is not executable
>
> your mpich2 tarball may have been corrupted or you have permission issue
> on your
> filesystem. Download mpich2 and try again.
>
> A.Chan
>
> ----- Original Message -----
> > ---------- Forwarded message ----------
> > From: Balaji S <balaji.ceg.13 at gmail.com>
> > Date: Wed, Feb 22, 2012 at 9:55 PM
> > Subject: Installation error in ubuntu
> > To: mpich-discuss at mcs.anl.gov
> >
> >
> > * *Hi,
> > I am new to mpich2, i try installing it in ubuntu 10.04. i have
> > gcc,g++ and gfortran. i used the option
> > ./configure --prefix=/home/balaji/mpich2-install 2>&1 | tee c.txt
> >
> > But i am getting some errors,
> > checking for rand... yes
> > checking for srand... yes
> > checking for OpenPA atomic primitive availability... no
> > configure: error:
> > The nemesis channel was selected yet a set of working OpenPA headers
> > were not found. Please check the OpenPA configure step for errors.
> > configure: error: channels/nemesis configure failed
> > configure: error: src/mpid/ch3 configure failed
> >
> > I hav attached the c.txt and config.log files along with this mail.
> >
> > Please help and clarify my doubt.
> >
> >
> > --
> > With Regards,
> > Balaji.S
> >
> >
> >
> >
> > --
> > With Regards,
> > Balaji.S
> >
> > _______________________________________________
> > mpich-discuss mailing list mpich-discuss at mcs.anl.gov
> > To manage subscription options or unsubscribe:
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> _______________________________________________
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--
With Regards,
Balaji.S
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Beginning make
Using variables CC='gcc' CFLAGS=' -O2' LDFLAGS=' ' F77='gfortran' FFLAGS=' -O2' FC='f95' FCFLAGS=' -O2' CXX='c++' CXXFLAGS=' -O2' AR='ar' CPP='gcc -E' CPPFLAGS=' -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpl/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpl/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src -I/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/locks -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/locks -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/balaji/fyp/mpich2-1.4.1p1/src/util/wrappers -I/home/balaji/fyp/mpich2-1.4.1p1/src/util/wrappers'
make all-local
make[1]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1'
make[1]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1'
make[1]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpl'
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mplstr.lo -MD -MP -MF .deps/mplstr.Tpo -c -o mplstr.lo `test -f 'src/mplstr.c' || echo './'`src/mplstr.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mplstr.lo -MD -MP -MF .deps/mplstr.Tpo -c src/mplstr.c -o mplstr.o
mv -f .deps/mplstr.Tpo .deps/mplstr.Plo
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mpltrmem.lo -MD -MP -MF .deps/mpltrmem.Tpo -c -o mpltrmem.lo `test -f 'src/mpltrmem.c' || echo './'`src/mpltrmem.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mpltrmem.lo -MD -MP -MF .deps/mpltrmem.Tpo -c src/mpltrmem.c -o mpltrmem.o
mv -f .deps/mpltrmem.Tpo .deps/mpltrmem.Plo
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mplenv.lo -MD -MP -MF .deps/mplenv.Tpo -c -o mplenv.lo `test -f 'src/mplenv.c' || echo './'`src/mplenv.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./include -I./include -I./include -MT mplenv.lo -MD -MP -MF .deps/mplenv.Tpo -c src/mplenv.c -o mplenv.o
mv -f .deps/mplenv.Tpo .deps/mplenv.Plo
/bin/bash ./libtool --tag=CC --mode=link gcc -version-info 2:0:1 -o libmpl.la -rpath /home/balaji/mpich2-install/lib mplstr.lo mpltrmem.lo mplenv.lo
libtool: link: rm -fr .libs/libmpl.a .libs/libmpl.la .libs/libmpl.lai
libtool: link: ar cru .libs/libmpl.a mplstr.o mpltrmem.o mplenv.o
libtool: link: ranlib .libs/libmpl.a
libtool: link: ( cd ".libs" && rm -f "libmpl.la" && ln -s "../libmpl.la" "libmpl.la" )
make[1]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpl'
make[1]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa'
Making all in src
make[2]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src'
make all-am
make[3]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src'
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -MT opa_primitives.lo -MD -MP -MF .deps/opa_primitives.Tpo -c -o opa_primitives.lo opa_primitives.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -MT opa_primitives.lo -MD -MP -MF .deps/opa_primitives.Tpo -c opa_primitives.c -o opa_primitives.o
mv -f .deps/opa_primitives.Tpo .deps/opa_primitives.Plo
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -MT opa_queue.lo -MD -MP -MF .deps/opa_queue.Tpo -c -o opa_queue.lo opa_queue.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -MT opa_queue.lo -MD -MP -MF .deps/opa_queue.Tpo -c opa_queue.c -o opa_queue.o
mv -f .deps/opa_queue.Tpo .deps/opa_queue.Plo
/bin/bash ../libtool --tag=CC --mode=link gcc -version-info 1:0 -o libopa.la -rpath /home/balaji/mpich2-install/lib opa_primitives.lo opa_queue.lo -lpthread
libtool: link: rm -fr .libs/libopa.a .libs/libopa.la .libs/libopa.lai
libtool: link: ar cru .libs/libopa.a opa_primitives.o opa_queue.o
libtool: link: ranlib .libs/libopa.a
libtool: link: ( cd ".libs" && rm -f "libopa.la" && ln -s "../libopa.la" "libopa.la" )
make[3]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src'
make[2]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src'
Making all in test
make[2]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/test'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/test'
make[2]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa'
make[1]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/openpa'
make[1]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src'
make[2]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpl'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpl'
make[2]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid'
make[3]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common'
make[4]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype'
make[5]: Entering directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype/dataloop'
gcc -DHAVE_CONFIG_H -I. -I. -I./.. -I/home/balaji/fyp/mpich2-1.4.1p1/src/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/include -O2 -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpl/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpl/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src -I/home/balaji/fyp/mpich2-1.4.1p1/src/openpa/src -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/locks -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/locks -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/balaji/fyp/mpich2-1.4.1p1/src/util/wrappers -I/home/balaji/fyp/mpich2-1.4.1p1/src/util/wrappers -c dataloop.c
In file included from ./../mpid_dataloop.h:11,
from ./dataloop.h:16,
from dataloop.c:12:
/home/balaji/fyp/mpich2-1.4.1p1/src/include/mpi.h:1184:18: error: mpio.h: No such file or directory
make[5]: *** [dataloop.o] Error 1
make[5]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype/dataloop'
make[4]: *** [all-redirect] Error 2
make[4]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common/datatype'
make[3]: *** [all-redirect] Error 2
make[3]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid/common'
make[2]: *** [all-redirect] Error 2
make[2]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src/mpid'
make[1]: *** [all-redirect] Error 2
make[1]: Leaving directory `/home/balaji/fyp/mpich2-1.4.1p1/src'
make: *** [all-redirect] Error 2
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