[mpich-discuss] Regarding ROMIO packageinstallation with MPICH2 and LAM-MPI
Jeff Squyres (jsquyres)
jsquyres at cisco.com
Wed Feb 23 05:38:12 CST 2011
Please ask Open MPI questions on the Open MPI mailing list. It's somewhat rude to our MPICH hosts to ask them here on the MPICH list.
Sent from my PDA. No type good.
On Feb 22, 2011, at 11:19 PM, "shraddha" <shraddhav at cdac.in> wrote:
> Dear Pascal,
>
> I have already tried with your suggested option, but during MAKE I am getting below mentioned error for LAM-MPI-7.1.4 and 7.1.3.
>
>
>
> g++ -O3 -pthread -o impid client.o comm.o dance.o endian.o flow_control.o host.o host_ack.o host_long.o host_queue.o impid.o lamnodes.o local.o local_ack.o local_long.o local_queue.o local_req.o procs.o packet_mgmt.o router.o sequence.o yes ../../../share/libmpi/.libs/libmpi.a ../../../share/liblam/.libs/liblam.a -ldl /usr/local/lib/libtorque.so -lnsl -lutil
>
> g++: yes: No such file or directory
>
> make[3]: *** [impid] Error 1
>
> make[3]: Leaving directory `/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys/impid'
>
> make[2]: *** [all-recursive] Error 1
>
> make[2]: Leaving directory `/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys'
>
> make[1]: *** [all-recursive] Error 1
>
> make[1]: Leaving directory `/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb'
>
> make: *** [all-recursive] Error 1
>
>
>
> with OpenMPI-1.5
>
>
>
> ./configure --prefix=/share/apps/OpenMPI/romio-openmpi/gnu/gnu-412 CC=gcc CXX=g++ F77=gfortran FC=gfortran --with-threads --with-io-romio-flags=-with-file-system=ufs+nfs
>
> Make and make install successful.
>
>
>
> But not getting libmpio.a or mpio.h file.
>
>
>
> openmpi-1.5]$ ls /share/apps/OpenMPI/romio-openmpi/gnu/gnu-412/lib
>
> libmca_common_sm.la libmpi.so libotf.so libvt-mpi.so.0
>
> libmca_common_sm.so libmpi.so.1 libotf.so.0 libvt-mpi.so.0.0.0
>
> libmca_common_sm.so.2 libmpi.so.1.0.0 libotf.so.0.0.1 libvt-mt.a
>
> libmca_common_sm.so.2.0.0 libompitrace.la libvt.a libvt-mt.la
>
> libmpi_cxx.la libompitrace.so libvt-hyb.a libvt-mt.so
>
> libmpi_cxx.so libompitrace.so.0 libvt-hyb.la libvt-mt.so.0
>
> libmpi_cxx.so.1 libompitrace.so.0.0.0 libvt-hyb.so libvt-mt.so.0.0.0
>
> libmpi_cxx.so.1.0.0 libopen-pal.la libvt-hyb.so.0 libvt-pomp.a
>
> libmpi_f77.la libopen-pal.so libvt-hyb.so.0.0.0 libvt-pomp.la
>
> libmpi_f77.so libopen-pal.so.1 libvt-java.la libvt.so
>
> libmpi_f77.so.1 libopen-pal.so.1.0.0 libvt-java.so libvt.so.0
>
> libmpi_f77.so.1.0.0 libopen-rte.la libvt-java.so.0 libvt.so.0.0.0
>
> libmpi_f90.la libopen-rte.so libvt-java.so.0.0.0 mpi.mod
>
> libmpi_f90.so libopen-rte.so.1 libvt.la openmpi
>
> libmpi_f90.so.1 libopen-rte.so.1.0.0 libvt-mpi.a pkgconfig
>
> libmpi_f90.so.1.0.0 libotf.a libvt-mpi.la
>
> libmpi.la libotf.la libvt-mpi.so
>
>
>
> Is this OpenMPI installed successfully with MPI-IO libraries or not, I am not able to conclude.
>
>
>
> -Shraddha Desai
>
>
>
>
>
>
>
>
>
> From: mpich-discuss-bounces at mcs.anl.gov [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Pascal Deveze
> Sent: Tuesday, February 22, 2011 6:32 PM
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] Regarding ROMIO package installation with MPICH2 and LAM-MPI
>
>
>
> Use the configure command at the root level with the right flag: with_io_romio_flags="--with-filesystem=ufs+nfs".
> This flag will generate MPI with ROMIO, with the support of UFS and NFS.
>
> If you want to transmit some other flags to the ROMIO configure, just add them : with_io_romio_flags="--with-filesystem=ufs+nfs --flag1=xx flag2=yyy"
>
> Pascal
>
>
> shraddha a écrit :
>
> Dear Pascal,
>
> My simple question is how can I create libmpio.a when MPICH2 or OpenMPI is installed with ROMIO support.
>
> OR
>
> How can I install ROMIO on top-of MPICH2 , LAM-MPI or OpenMPI??
>
>
>
> -Shraddha Desai
>
>
>
>
>
> From: mpich-discuss-bounces at mcs.anl.gov [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Pascal Deveze
> Sent: Tuesday, February 22, 2011 1:30 PM
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] Regarding ROMIO package installation with MPICH2 and LAM-MPI
>
>
>
> OK. You have already an MPI implementation.
>
> mpicc and mpif90 are wrappers that make "a bit more" than just calling gcc and gfortran. That could explain your error.
> Do you run "configure" with gfortran and gcc ?
>
> Pascal
>
> shraddha a écrit :
>
> Dear Pascal,
>
> As ROMIO configure is having –mpi (can be lam, mpich2) and –mpilibdir, -mpibindir, -mpilib options that means I am already having MPI implementation installed on my cluster, I am installing ROMIO (MPI-IO package) with the the use of mpi.
>
>
>
> Can you please correct me if I am wrong.
>
>
>
> -Shraddha Desai
>
>
>
> From: mpich-discuss-bounces at mcs.anl.gov [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Pascal Deveze
> Sent: Monday, February 21, 2011 8:35 PM
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] Regarding ROMIO package installation with MPICH2 and LAM-MPI
>
>
>
> Why do you specify -cc=mpicc -fc=mpif90 ?
> I mean you have to specify compilers, not MPI compilers.
>
> Pascal
>
> shraddha a écrit :
>
> Dear Sir,
>
> I have tried to install ROMIO with MPICH2 with following configure command.
>
>
>
> romio-1.2.5.1]$ ./configure --prefix=/home/shraddha/MPICH2/gnu/romio-1.2.5.1 -mpi=mpich -file_system=ufs+nfs -mpiincdir=/share/apps/mpich2/gnu/include -mpibindir=/share/apps/mpich2/gnu/bin -cc=mpicc -fc=mpif90 2>&1 | tee LOG-config-3
>
>
>
> Successful configuration, but make giving error
>
>
>
> Make Error:
>
>
>
> mpicc -O -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H -I/share/apps/mpich2/gnu/include -I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io -I../include -I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io/../adio/include -I../adio/include -c iread.c
>
> iread.c: In function 'PMPI_File_iread':
>
> iread.c:132: warning: passing argument 7 of 'fh->fns->ADIOI_xxx_IreadContig' from incompatible pointer type
>
> iread.c:138: warning: assignment makes integer from pointer without a cast
>
> iread.c:139: error: invalid type argument of '->'
>
> iread.c:140: error: invalid type argument of '->'
>
> iread.c:141: error: invalid type argument of '->'
>
> iread.c:142: error: invalid type argument of '->'
>
> iread.c:143: error: invalid type argument of '->'
>
> iread.c:162: warning: passing argument 7 of 'fh->fns->ADIOI_xxx_IreadStrided' from incompatible pointer type
>
> make[2]: *** [iread.o] Error 1
>
> make[2]: Leaving directory `/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io'
>
> Make failed in directory mpi-io
>
> make[1]: *** [mpiolib] Error 1
>
> make[1]: Leaving directory `/home/kmathur/MPICH2/gnu/romio-1.2.5.1'
>
> make: *** [mpio] Error 2
>
>
>
> I am trying to configure ROMIO with lam-mpi but getting error at configure stage:
>
>
>
> romio-1.2.5.1]$ ./configure --prefix=/share/apps/ROMIO/LAMMPI/gnu/gnu-412 -mpi=lam_mpi -file_system=ufs+nfs -mpiincdir=/share/apps/LAM-MPI/gnu/gnu-412/include -mpilib=/share/apps/LAM-MPI/gnu/gnu-412/lib/libmpi.a -cc=mpicc -fc=mpif90
>
>
>
> checking if a simple MPI program compiles and links...
>
> *# Unable to compile a simple MPI program
>
> *# Use the -mpi, -mpiincdir, and -mpilib options to configure to specify the
>
> *# MPI implementation, the include path for mpi.h, and the MPI library to link
>
>
>
> Can you please tell me the proper way to install ROMIO with both MPICH2 and LAM-MPI??
>
> How can I create libmpio.a ?? which will be useful to compile MPI-IO programs.
>
> Your help would be greatly appreciable for me.
>
>
>
> Regards,
>
> Shraddha Desai
>
>
>
>
>
>
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