<html><body bgcolor="#FFFFFF"><div>Please ask Open MPI questions on the Open MPI mailing list. It's somewhat rude to our MPICH hosts to ask them here on the MPICH list. <br><br>Sent from my PDA.<span class="Apple-style-span" style="-webkit-tap-highlight-color: rgba(26, 26, 26, 0.296875); -webkit-composition-fill-color: rgba(175, 192, 227, 0.230469); -webkit-composition-frame-color: rgba(77, 128, 180, 0.230469); "> No type good. </span></div><div><br>On Feb 22, 2011, at 11:19 PM, "shraddha" <<a href="mailto:shraddhav@cdac.in">shraddhav@cdac.in</a>> wrote:<br><br></div><div></div><blockquote type="cite"><div>
<div class="Section1">
<p class="MsoNormal"><span style="color:#1F497D">Dear Pascal,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"> I have already
tried with your suggested option, but during MAKE I am getting below mentioned
error for LAM-MPI-7.1.4 and 7.1.3.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">g++ -O3 -pthread -o impid
client.o comm.o dance.o endian.o flow_control.o host.o host_ack.o host_long.o
host_queue.o impid.o lamnodes.o local.o local_ack.o local_long.o local_queue.o
local_req.o procs.o packet_mgmt.o router.o sequence.o yes ../../../share/libmpi/.libs/libmpi.a
../../../share/liblam/.libs/liblam.a -ldl /usr/local/lib/libtorque.so -lnsl
-lutil<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">g++: yes: No such file or
directory<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[3]: *** [impid] Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[3]: Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys/impid'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[2]: *** [all-recursive]
Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[2]: Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb/sys'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[1]: *** [all-recursive]
Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make[1]: Leaving directory
`/home/shraddha/LAM-MPI/gnu/romio-lam/lam-7.1.4/otb'<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">make: *** [all-recursive] Error
1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"> with OpenMPI-1.5 <o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">./configure
--prefix=/share/apps/OpenMPI/romio-openmpi/gnu/gnu-412 CC=gcc CXX=g++
F77=gfortran FC=gfortran --with-threads
--with-io-romio-flags=-with-file-system=ufs+nfs<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Make and make install
successful.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">But not getting libmpio.a or
mpio.h file.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="color:#1F497D">openmpi-1.5]$ ls
/share/apps/OpenMPI/romio-openmpi/gnu/gnu-412/lib<o:p></o:p></span></b></p>
<p class="MsoNormal"><span style="color:#1F497D">libmca_common_sm.la
libmpi.so libotf.so libvt-mpi.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmca_common_sm.so
libmpi.so.1 libotf.so.0 libvt-mpi.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmca_common_sm.so.2
libmpi.so.1.0.0 libotf.so.0.0.1 libvt-mt.a<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmca_common_sm.so.2.0.0
libompitrace.la libvt.a libvt-mt.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_cxx.la
libompitrace.so libvt-hyb.a libvt-mt.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_cxx.so
libompitrace.so.0 libvt-hyb.la libvt-mt.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_cxx.so.1
libompitrace.so.0.0.0 libvt-hyb.so libvt-mt.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_cxx.so.1.0.0
libopen-pal.la libvt-hyb.so.0 libvt-pomp.a<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f77.la
libopen-pal.so libvt-hyb.so.0.0.0 libvt-pomp.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f77.so
libopen-pal.so.1 libvt-java.la libvt.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f77.so.1
libopen-pal.so.1.0.0 libvt-java.so libvt.so.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f77.so.1.0.0
libopen-rte.la libvt-java.so.0 libvt.so.0.0.0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f90.la
libopen-rte.so libvt-java.so.0.0.0 mpi.mod<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f90.so
libopen-rte.so.1 libvt.la openmpi<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f90.so.1
libopen-rte.so.1.0.0 libvt-mpi.a pkgconfig<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi_f90.so.1.0.0 libotf.a
libvt-mpi.la<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">libmpi.la
libotf.la libvt-mpi.so<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Is this OpenMPI installed
successfully with MPI-IO libraries or not, I am not able to conclude.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">-Shraddha Desai<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<div>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";
color:windowtext">From:</span></b><span style="font-size:10.0pt;font-family:
"Tahoma","sans-serif";color:windowtext"> <a href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a>
[mailto:mpich-discuss-bounces@mcs.anl.gov] <b>On Behalf Of </b>Pascal Deveze<br>
<b>Sent:</b> Tuesday, February 22, 2011 6:32 PM<br>
<b>To:</b> <a href="mailto:mpich-discuss@mcs.anl.gov"><a href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a></a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package installation with MPICH2
and LAM-MPI<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Use the configure command at the root level with the right
flag: with_io_romio_flags="--with-filesystem=ufs+nfs".<br>
This flag will generate MPI with ROMIO, with the support of UFS and NFS.<br>
<br>
If you want to transmit some other flags to the ROMIO configure, just add them
: with_io_romio_flags="--with-filesystem=ufs+nfs --flag1=xx
flag2=yyy"<br>
<br>
Pascal<br>
<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">Dear Pascal,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">
My simple question is how can I create libmpio.a when MPICH2 or OpenMPI is
installed with ROMIO support.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">
OR</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">
How can I install ROMIO on top-of MPICH2 , LAM-MPI or OpenMPI??</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">-Shraddha Desai</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<div>
<div style="border:none;border-top:solid windowtext 1.0pt;padding:3.0pt 0in 0in 0in;
border-color:-moz-use-text-color -moz-use-text-color">
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";
color:windowtext">From:</span></b><span style="font-size:10.0pt;font-family:
"Tahoma","sans-serif";color:windowtext"> <a href="mailto:mpich-discuss-bounces@mcs.anl.gov"><a href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a></a>
[<a href="mailto:mpich-discuss-bounces@mcs.anl.gov"><a href="mailto:mpich-discuss-bounces@mcs.anl.gov">mailto:mpich-discuss-bounces@mcs.anl.gov</a></a>]
<b>On Behalf Of </b>Pascal Deveze<br>
<b>Sent:</b> Tuesday, February 22, 2011 1:30 PM<br>
<b>To:</b> <a href="mailto:mpich-discuss@mcs.anl.gov"><a href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a></a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package installation with
MPICH2 and LAM-MPI</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">OK. You have already an MPI implementation.<br>
<br>
mpicc and mpif90 are wrappers that make "a bit more" than just
calling gcc and gfortran. That could explain your error.<br>
Do you run "configure" with gfortran and gcc ?<br>
<br>
Pascal<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">Dear Pascal,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">
As ROMIO configure is having –mpi (can be lam, mpich2) and
–mpilibdir, -mpibindir, -mpilib options that means I am already having
MPI implementation installed on my cluster, I am installing ROMIO (MPI-IO
package) with the the use of mpi.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">Can you please correct me if I
am wrong.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">-Shraddha Desai</span><o:p></o:p></p>
<p class="MsoNormal"><span style="color:#1F497D"> </span><o:p></o:p></p>
<div>
<div style="border:none;border-top:solid windowtext 1.0pt;padding:3.0pt 0in 0in 0in;
border-color:-moz-use-text-color">
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";
color:windowtext">From:</span></b><span style="font-size:10.0pt;font-family:
"Tahoma","sans-serif";color:windowtext"> <a href="mailto:mpich-discuss-bounces@mcs.anl.gov"><a href="mailto:mpich-discuss-bounces@mcs.anl.gov">mpich-discuss-bounces@mcs.anl.gov</a></a>
[<a href="mailto:mpich-discuss-bounces@mcs.anl.gov"><a href="mailto:mpich-discuss-bounces@mcs.anl.gov">mailto:mpich-discuss-bounces@mcs.anl.gov</a></a>]
<b>On Behalf Of </b>Pascal Deveze<br>
<b>Sent:</b> Monday, February 21, 2011 8:35 PM<br>
<b>To:</b> <a href="mailto:mpich-discuss@mcs.anl.gov"><a href="mailto:mpich-discuss@mcs.anl.gov">mpich-discuss@mcs.anl.gov</a></a><br>
<b>Subject:</b> Re: [mpich-discuss] Regarding ROMIO package installation with MPICH2
and LAM-MPI</span><o:p></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Why do you specify -cc=mpicc -fc=mpif90 ?<br>
I mean you have to specify compilers, not MPI compilers.<br>
<br>
Pascal<br>
<br>
shraddha a écrit : <o:p></o:p></p>
<p class="MsoNormal">Dear Sir,<o:p></o:p></p>
<p class="MsoNormal">
I have tried to install ROMIO with MPICH2 with following configure command.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"><b>romio-1.2.5.1]$ ./configure
--prefix=/home/shraddha/MPICH2/gnu/romio-1.2.5.1 -mpi=mpich
-file_system=ufs+nfs -mpiincdir=/share/apps/mpich2/gnu/include
-mpibindir=/share/apps/mpich2/gnu/bin -cc=mpicc -fc=mpif90 2>&1 | tee
LOG-config-3</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal"><b>Successful configuration, but make giving error</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal"><b>Make Error:</b><o:p></o:p></p>
<p class="MsoNormal"><b> </b><o:p></o:p></p>
<p class="MsoNormal">mpicc -O -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H
-I/share/apps/mpich2/gnu/include
-I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io -I../include
-I/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io/../adio/include -I../adio/include
-c iread.c<o:p></o:p></p>
<p class="MsoNormal">iread.c: In function 'PMPI_File_iread':<o:p></o:p></p>
<p class="MsoNormal">iread.c:132: warning: passing argument 7 of
'fh->fns->ADIOI_xxx_IreadContig' from incompatible pointer type<o:p></o:p></p>
<p class="MsoNormal">iread.c:138: warning: assignment makes integer from pointer
without a cast<o:p></o:p></p>
<p class="MsoNormal">iread.c:139: error: invalid type argument of '->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:140: error: invalid type argument of '->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:141: error: invalid type argument of '->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:142: error: invalid type argument of '->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:143: error: invalid type argument of '->'<o:p></o:p></p>
<p class="MsoNormal">iread.c:162: warning: passing argument 7 of
'fh->fns->ADIOI_xxx_IreadStrided' from incompatible pointer type<o:p></o:p></p>
<p class="MsoNormal">make[2]: *** [iread.o] Error 1<o:p></o:p></p>
<p class="MsoNormal">make[2]: Leaving directory
`/home/kmathur/MPICH2/gnu/romio-1.2.5.1/mpi-io'<o:p></o:p></p>
<p class="MsoNormal">Make failed in directory mpi-io<o:p></o:p></p>
<p class="MsoNormal">make[1]: *** [mpiolib] Error 1<o:p></o:p></p>
<p class="MsoNormal">make[1]: Leaving directory
`/home/kmathur/MPICH2/gnu/romio-1.2.5.1'<o:p></o:p></p>
<p class="MsoNormal">make: *** [mpio] Error 2<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">I am trying to configure ROMIO with lam-mpi but getting
error at configure stage:<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"><b>romio-1.2.5.1]$ ./configure</b>
--prefix=/share/apps/ROMIO/LAMMPI/gnu/gnu-412 -mpi=lam_mpi -file_system=ufs+nfs
-mpiincdir=/share/apps/LAM-MPI/gnu/gnu-412/include
-mpilib=/share/apps/LAM-MPI/gnu/gnu-412/lib/libmpi.a -cc=mpicc -fc=mpif90<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">checking if a simple MPI program compiles and links...<o:p></o:p></p>
<p class="MsoNormal">*# Unable to compile a simple MPI program<o:p></o:p></p>
<p class="MsoNormal">*# Use the -mpi, -mpiincdir, and -mpilib options to
configure to specify the<o:p></o:p></p>
<p class="MsoNormal">*# MPI implementation, the include path for mpi.h, and the
MPI library to link<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Can you please tell me the proper way to install ROMIO with
both MPICH2 and LAM-MPI??<o:p></o:p></p>
<p class="MsoNormal">How can I create libmpio.a ?? which will be useful to
compile MPI-IO programs.<o:p></o:p></p>
<p class="MsoNormal">Your help would be greatly appreciable for me.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Regards,<o:p></o:p></p>
<p class="MsoNormal">Shraddha Desai<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
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