[mpich-discuss] mpich2-1.2.1p1 - cannot create regular file`/index.htm': Permission denied
Dave Goodell
goodell at mcs.anl.gov
Mon Mar 15 11:23:04 CDT 2010
In the future, "rsync -a" might help you to preserve timestamps when
making copies.
-Dave
On Mar 13, 2010, at 10:11 AM, Preeti wrote:
> Hello
>
> For some reason I thought gunzip was not there in the remote
> machine, so I kept of un-tarring in my local m/c and then copying. I
> did not realize that this would be an issue, sorry for that, could
> not understand from the error messages. Copying the tar file to the
> remote machine and then installing worked fine.
>
> I am extremely sorry for my mistake and thank you very much for your
> help.
>
>
> Thanks
> Preeti
>
>
>
> On Fri, Mar 12, 2010 at 3:31 AM, Pavan Balaji <balaji at mcs.anl.gov>
> wrote:
>
> No, the point is the user should not need to use autotools at all if
> building from the released tarball.
>
> The problem that was happening was that MPL has some time stamp for
> aclocal.m4 that it creates, and then Hydra goes and overwrites it,
> creating a dependency mess within the Makefile.
>
> -- Pavan
>
> On 03/11/2010 03:53 PM, Anthony Chan wrote:
> > Pavan,
> >
> > This guy's system is pretty old, he does not seem to have the
> autotools
> > needed to rebuild the configure and Makefile.in involved.
> >
> > A.Chan
> >
> > ----- "Pavan Balaji" <balaji at mcs.anl.gov> wrote:
> >
> >> Ah, I should have seen this earlier. My guess is that you are
> running
> >> into the autotools ordering issue that we fixed in r6292
> >> (http://trac.mcs.anl.gov/projects/mpich2/changeset/6292).
> >>
> >> Can you try out the latest nightly snapshot to see if the problem
> >> still
> >> exists?
> >>
> >> http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/nightly/trunk
> >>
> >> -- Pavan
> >>
> >> On 03/11/2010 03:34 PM, Rajeev Thakur wrote:
> >>> We build MPICH2 quite routinely following the exact steps in the
> >> README
> >>> file, so something strange is happening in your specific case.
> >>>
> >>> Rajeev
> >>>
> >>>
> >>
> ------------------------------------------------------------------------
> >>> *From:* mpich-discuss-bounces at mcs.anl.gov
> >>> [mailto:mpich-discuss-bounces at mcs.anl.gov] *On Behalf Of
> >> *Preeti
> >>> *Sent:* Thursday, March 11, 2010 1:26 PM
> >>> *To:* mpich-discuss at mcs.anl.gov
> >>> *Subject:* Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> >>> regular file`/index.htm': Permission denied
> >>>
> >>> Hi
> >>>
> >>> Thanks for the replies, but I get following errors.
> >>>
> >>> 1. If I do only build in /tmp
> >>> cannot create regular file `/index.htm': Permission denied
> >>>
> >>> 2. if I do everything in /tmp, then the following error.
> >>> " Making all in mpl
> >>> /bin/sh: line 17: cd: mpl: No such file or directory
> >>> make[3]: *** [all-recursive] Error 1"
> >>>
> >>> I have sent both log files earlier.
> >>> Yes, the /home/vss is network file system. I have no root
> access
> >> to
> >>> the system.
> >>>
> >>> Is there any way out of this?
> >>> Please help.
> >>>
> >>>
> >>> Thanks
> >>> Preeti
> >>>
> >>>
> >>>
> >>>
> >>> On Thu, Mar 11, 2010 at 11:18 PM, Rajeev Thakur
> >> <thakur at mcs.anl.gov
> >>> <mailto:thakur at mcs.anl.gov>> wrote:
> >>>
> >>> Just untar and build it again on a local disk. The install
> >> directory
> >>> (--prefix option to configure) can be on NFS.
> >>>
> >>> Rajeev
> >>>
> >>> > -----Original Message-----
> >>> > From: mpich-discuss-bounces at mcs.anl.gov
> >>> <mailto:mpich-discuss-bounces at mcs.anl.gov>
> >>> > [mailto:mpich-discuss-bounces at mcs.anl.gov
> >>> <mailto:mpich-discuss-bounces at mcs.anl.gov>] On Behalf Of
> >>> > chan at mcs.anl.gov <mailto:chan at mcs.anl.gov>
> >>> > Sent: Thursday, March 11, 2010 11:48 AM
> >>> > To: mpich-discuss at mcs.anl.gov
> >> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot
> >> create
> >>> > regular file `/index.htm': Permission denied
> >>> >
> >>> >
> >>> > Is your /home/vss a local filesystem or some type
> >>> > network file system ? If /home/vss is a network
> >>> > filesystem, the problem could be incorrect clock
> >>> > on the filesystem. If so, could you copy
> >>> > everything to a local filesystem like /tmp(assuming
> >>> > it is big enough) and try again ?
> >>> >
> >>> > ----- "Preeti" <preeti at csa.iisc.ernet.in
> >>> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> >>> >
> >>> > > Hello
> >>> > >
> >>> > > I have rebuilt everything without setting the flags
> >> also
> >>> > >
> >>> > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> >>> > > --prefix=/home/vss/preeti/bin/2-1.2.1build --enable-
> f90
> >> 2>&1
> >>> | tee
> >>> > > c.log
> >>> > >
> >>> > > make 2>&1 | tee m.log
> >>> > > make install 2>&1 | tee mi.log
> >>> > >
> >>> > >
> >>> > > and this time I get the following error
> >>> > >
> >>> > > /usr/bin/install -c -m 644 index.htm /index.htm
> >>> > > /usr/bin/install: cannot create regular file
> >> `/index.htm':
> >>> > Permission
> >>> > > denied
> >>> > > mkdir: cannot create directory `/www1': Permission
> >> denied
> >>> > >
> >>> > >
> >>> > > The log files are attached.
> >>> > > What am I missing?
> >>> > >
> >>> > > Appreciate your help.
> >>> > >
> >>> > >
> >>> > > Thanks
> >>> > > Preeti
> >>> > >
> >>> > >
> >>> > >
> >>> > >
> >>> > > On Thu, Mar 11, 2010 at 4:37 PM, Preeti
> >>> <preeti at csa.iisc.ernet.in
> >> <mailto:preeti at csa.iisc.ernet.in>>
> >>> > > wrote:
> >>> > >
> >>> > > > Hello
> >>> > > >
> >>> > > > I have rebuilt everything from scratch and did vpath
> >> build.
> >>> > > > I set the following
> >>> > > >
> >>> > > >
> >>> > > > export F90=gfortran
> >>> > > > export F77=gfortran
> >>> > > > export LD_LIBRARY_PATH=/usr/lib64:/lib:/usr/lib
> >>> > > > export LD_RUN_PATH=/usr/lib64:/lib:/usr/lib
> >>> > > >
> >>> > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> >>> > > > --prefix=/home/vss/preeti/bin/2-1.2.1p1 --enable-f90
> >> 2>&1
> >>> | tee
> >>> > > c.log
> >>> > > >
> >>> > > > make 2>&1 | tee m.log
> >>> > > >
> >>> > > >
> >>> > > > Then I get the error
> >>> > > >
> >>> > > > Making all in mpl
> >>> > > > /bin/sh: line 17: cd: mpl: No such file or directory
> >>> > > >
> >>> > > > make[3]: *** [all-recursive] Error 1
> >>> > > >
> >>> > > > The files are attached.
> >>> > > > Please help.
> >>> > > >
> >>> > > >
> >>> > > > Thanks
> >>> > > > Preeti
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > > On Thu, Mar 11, 2010 at 1:53 AM, <chan at mcs.anl.gov
> >>> <mailto:chan at mcs.anl.gov>> wrote:
> >>> > > >
> >>> > > >>
> >>> > > >> I don't think setting F77 and F90 causes the
> problem
> >> that
> >>> > > >> you are seeing. The directories or subpackges that
> >> have
> >>> > > >> problems use a different build system than the
> >> majority of
> >>> > > >> mpich2 base, so it could be that there is bugs in
> >> the
> >>> > build system
> >>> > > >> in those subpackage.
> >>> > > >>
> >>> > > >> Since you didn't do "make distclean" before you
> >>> reconfigure, so
> >>> > > >> the m.log(.old) do not tell me much. Can you
> rebuild
> >>> everything
> >>> > > >> from scratch ? i.e. untar the mpich2 tarball in a
> >> different
> >>> > > location.
> >>> > > >> Instead of doing an inpath build (i.e. cd
> >> mpich2-1.2.1p1/ ;
> >>> > > >> ./configure....),
> >>> > > >> could you do a VPATH build as documented in the
> >> README
> >>> > (search for
> >>> > > the
> >>> > > >> word VPATH)? Send us the configure and make
> outputs
> >> again
> >>> > > >> (be sure to add 2>&1 in creating the output files).
> >>> > > >>
> >>> > > >> A.Chan
> >>> > > >>
> >>> > > >>
> >>> > > >> ----- "Preeti" <preeti at csa.iisc.ernet.in
> >>> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> >>> > > >>
> >>> > > >> > Hello
> >>> > > >> >
> >>> > > >> > Thank you for the quick response.
> >>> > > >> >
> >>> > > >> > I forgot to mention that I had set two flags
> >> earlier.
> >>> > > >> > export F90=gfortran
> >>> > > >> > export F77=gfortran
> >>> > > >> >
> >>> > > >> > The earlier problem is gone when I compiled
> without
> >> setting
> >>> > > these. I
> >>> > > >> > am
> >>> > > >> > attaching all log files, the earlier ones and the
> >> new ones.
> >>> > > >> >
> >>> > > >> > Now I am facing another error which is from "make
> >>> install 2>& |
> >>> > > tee
> >>> > > >> > mi.log"
> >>> > > >> >
> >>> > > >> > /usr/bin/install: cannot create regular file
> >> `/index.htm':
> >>> > > Permission
> >>> > > >> > denied
> >>> > > >> >
> >>> > > >> > Probably some variable is not set. I tried
> setting
> >>> docdir too.
> >>> > > >> > mi.log is also attached.
> >>> > > >> >
> >>> > > >> > Please help.
> >>> > > >> >
> >>> > > >> >
> >>> > > >> > Thanks
> >>> > > >> > Preeti
> >>> > > >> >
> >>> > > >> >
> >>> > > >> >
> >>> > > >> > On Wed, Mar 10, 2010 at 9:33 PM,
> <chan at mcs.anl.gov
> >>> <mailto:chan at mcs.anl.gov>> wrote:
> >>> > > >> >
> >>> > > >> > >
> >>> > > >> > > It is unclear what went wrong based on what
> >> you've
> >>> > provided so
> >>> > > far.
> >>> > > >> > > Can you send us the configure and make outputs
> >> as
> >>> stated in
> >>> > > the
> >>> > > >> > > README (be sure to include the stderr in the
> >> output
> >>> file) ?
> >>> > > >> > >
> >>> > > >> > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> >>> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> >>> > > >> > >
> >>> > > >> > > > Hello
> >>> > > >> > > >
> >>> > > >> > > > I am trying to install mpich2-1.2.1p1 on a
> >> 64-bit Linux
> >>> > > system.
> >>> > > >> > > >
> >>> > > >> > > > Configuration was successful.
> >>> > > >> > > > ./configure --prefix=$HOME/local/mpich2-1.2.1
> >>> > --enable-f90 |
> >>> > > tee
> >>> > > >> > > > c.log
> >>> > > >> > >
> >>> > > >> > > BTW, you didn't include stderr in c.log.
> Depends
> >> on
> >>> > the shell
> >>> > > you
> >>> > > >> > > use, you need to either add "&" or "2>&1". See
> >>> README for
> >>> > > >> > details..
> >>> > > >> > >
> >>> > > >> > > A.Chan
> >>> > > >> > >
> >>> > > >> > > _______________________________________________
> >>> > > >> > > mpich-discuss mailing list
> >>> > > >> > > mpich-discuss at mcs.anl.gov
> >>> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > > >> > >
> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>> > > >> > >
> >>> > > >> > > --
> >>> > > >> > > This message has been scanned for viruses and
> >>> > > >> > > dangerous content by MailScanner, and is
> >>> > > >> > > believed to be clean.
> >>> > > >> > >
> >>> > > >> > >
> >>> > > >> >
> >>> > > >> > _______________________________________________
> >>> > > >> > mpich-discuss mailing list
> >>> > > >> > mpich-discuss at mcs.anl.gov
> >>> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > > >> >
> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>> > > >> _______________________________________________
> >>> > > >> mpich-discuss mailing list
> >>> > > >> mpich-discuss at mcs.anl.gov
> >> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > > >>
> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>> > > >>
> >>> > > >> --
> >>> > > >> This message has been scanned for viruses and
> >>> > > >> dangerous content by MailScanner, and is
> >>> > > >> believed to be clean.
> >>> > > >>
> >>> > > >>
> >>> > > >
> >>> > >
> >>> > > _______________________________________________
> >>> > > mpich-discuss mailing list
> >>> > > mpich-discuss at mcs.anl.gov
> >> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > >
> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>> > _______________________________________________
> >>> > mpich-discuss mailing list
> >>> > mpich-discuss at mcs.anl.gov
> >> <mailto:mpich-discuss at mcs.anl.gov>
> >>> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>> >
> >>>
> >>> _______________________________________________
> >>> mpich-discuss mailing list
> >>> mpich-discuss at mcs.anl.gov
> >> <mailto:mpich-discuss at mcs.anl.gov>
> >>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >>>
> >>> --
> >>> This message has been scanned for viruses and
> >>> dangerous content by MailScanner, and is
> >>> believed to be clean.
> >>>
> >>>
> >>>
> >>>
> >>
> ------------------------------------------------------------------------
> >>> _______________________________________________
> >>> mpich-discuss mailing list
> >>> mpich-discuss at mcs.anl.gov
> >>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >> --
> >> Pavan Balaji
> >> http://www.mcs.anl.gov/~balaji
> >> _______________________________________________
> >> mpich-discuss mailing list
> >> mpich-discuss at mcs.anl.gov
> >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > _______________________________________________
> > mpich-discuss mailing list
> > mpich-discuss at mcs.anl.gov
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
> --
> Pavan Balaji
> http://www.mcs.anl.gov/~balaji
> _______________________________________________
> mpich-discuss mailing list
> mpich-discuss at mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
> --
> This message has been scanned for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
>
>
> _______________________________________________
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