[mpich-discuss] mpich2-1.2.1p1 - cannot create regular file `/index.htm': Permission denied

Thu Mar 11 13:26:25 CST 2010

Hi

Thanks for the replies, but I get following errors.

1. If I do only build in /tmp
cannot create regular file `/index.htm': Permission denied

2. if I do everything in /tmp, then the following error.
 " Making all in mpl
/bin/sh: line 17: cd: mpl: No such file or directory
make[3]: *** [all-recursive] Error 1"

I have sent both log files earlier.
Yes, the /home/vss is network file system. I have no root access to the
system.

Is there any way out of this?
Please help.

Thanks
Preeti

On Thu, Mar 11, 2010 at 11:18 PM, Rajeev Thakur <thakur at mcs.anl.gov> wrote:

> Just untar and build it again on a local disk. The install directory
> (--prefix option to configure) can be on NFS.
>
> Rajeev
>
> > -----Original Message-----
> > From: mpich-discuss-bounces at mcs.anl.gov
> > [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of
> > chan at mcs.anl.gov
> > Sent: Thursday, March 11, 2010 11:48 AM
> > To: mpich-discuss at mcs.anl.gov
> > Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> > regular file `/index.htm': Permission denied
> >
> >
> > Is your /home/vss a local filesystem or some type
> > network file system ?  If /home/vss is a network
> > filesystem, the problem could be incorrect clock
> > on the filesystem. If so, could you copy
> > everything to a local filesystem like /tmp(assuming
> > it is big enough) and try again ?
> >
> > ----- "Preeti" <preeti at csa.iisc.ernet.in> wrote:
> >
> > > Hello
> > >
> > > I have rebuilt everything without setting the flags also
> > >
> > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > --prefix=/home/vss/preeti/bin/2-1.2.1build --enable-f90 2>&1 | tee
> > > c.log
> > >
> > > make 2>&1 | tee m.log
> > > make install 2>&1 | tee mi.log
> > >
> > >
> > > and this time I get the following error
> > >
> > > /usr/bin/install -c -m 644 index.htm /index.htm
> > > /usr/bin/install: cannot create regular file `/index.htm':
> > Permission
> > > denied
> > > mkdir: cannot create directory `/www1': Permission denied
> > >
> > >
> > > The log files are attached.
> > > What am I missing?
> > >
> > > Appreciate your help.
> > >
> > >
> > > Thanks
> > > Preeti
> > >
> > >
> > >
> > >
> > > On Thu, Mar 11, 2010 at 4:37 PM, Preeti <preeti at csa.iisc.ernet.in>
> > > wrote:
> > >
> > > > Hello
> > > >
> > > > I have rebuilt everything from scratch and did vpath build.
> > > > I set the following
> > > >
> > > >
> > > > export F90=gfortran
> > > > export F77=gfortran
> > > > export LD_LIBRARY_PATH=/usr/lib64:/lib:/usr/lib
> > > > export LD_RUN_PATH=/usr/lib64:/lib:/usr/lib
> > > >
> > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > --prefix=/home/vss/preeti/bin/2-1.2.1p1 --enable-f90 2>&1 | tee
> > > c.log
> > > >
> > > > make 2>&1 | tee m.log
> > > >
> > > >
> > > > Then I get the error
> > > >
> > > > Making all in mpl
> > > > /bin/sh: line 17: cd: mpl: No such file or directory
> > > >
> > > > make[3]: *** [all-recursive] Error 1
> > > >
> > > > The files are attached.
> > > > Please help.
> > > >
> > > >
> > > > Thanks
> > > > Preeti
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > On Thu, Mar 11, 2010 at 1:53 AM, <chan at mcs.anl.gov> wrote:
> > > >
> > > >>
> > > >> I don't think setting F77 and F90 causes the problem that
> > > >> you are seeing.  The directories or subpackges that have
> > > >> problems use a different build system than the majority of
> > > >> mpich2 base, so it could be that there is bugs in the
> > build system
> > > >> in those subpackage.
> > > >>
> > > >> Since you didn't do "make distclean" before you reconfigure, so
> > > >> the m.log(.old) do not tell me much. Can you rebuild everything
> > > >> from scratch ?  i.e. untar the mpich2 tarball in a different
> > > location.
> > > >> Instead of doing an inpath build (i.e. cd mpich2-1.2.1p1/ ;
> > > >> ./configure....),
> > > >> could you do a VPATH build as documented in the README
> > (search for
> > > the
> > > >> word VPATH)?  Send us the configure and make outputs again
> > > >> (be sure to add 2>&1 in creating the output files).
> > > >>
> > > >> A.Chan
> > > >>
> > > >>
> > > >> ----- "Preeti" <preeti at csa.iisc.ernet.in> wrote:
> > > >>
> > > >> > Hello
> > > >> >
> > > >> > Thank you for the quick response.
> > > >> >
> > > >> > I forgot to mention that I had set two flags earlier.
> > > >> > export F90=gfortran
> > > >> > export F77=gfortran
> > > >> >
> > > >> > The earlier problem is gone when I compiled without setting
> > > these. I
> > > >> > am
> > > >> > attaching all log files, the earlier ones and the new ones.
> > > >> >
> > > >> > Now I am facing another error which is from "make install 2>& |
> > > tee
> > > >> > mi.log"
> > > >> >
> > > >> > /usr/bin/install: cannot create regular file `/index.htm':
> > > Permission
> > > >> > denied
> > > >> >
> > > >> > Probably some variable is not set. I tried setting docdir too.
> > > >> > mi.log is also attached.
> > > >> >
> > > >> > Please help.
> > > >> >
> > > >> >
> > > >> > Thanks
> > > >> > Preeti
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Wed, Mar 10, 2010 at 9:33 PM, <chan at mcs.anl.gov> wrote:
> > > >> >
> > > >> > >
> > > >> > > It is unclear what went wrong based on what you've
> > provided so
> > > far.
> > > >> > > Can you send us the configure and make outputs as stated in
> > > the
> > > >> > > README (be sure to include the stderr in the output file) ?
> > > >> > >
> > > >> > > ----- "Preeti" <preeti at csa.iisc.ernet.in> wrote:
> > > >> > >
> > > >> > > > Hello
> > > >> > > >
> > > >> > > > I am trying to install mpich2-1.2.1p1 on a 64-bit Linux
> > > system.
> > > >> > > >
> > > >> > > > Configuration was successful.
> > > >> > > > ./configure --prefix=$HOME/local/mpich2-1.2.1
> > --enable-f90 |
> > > tee
> > > >> > > > c.log
> > > >> > >
> > > >> > > BTW, you didn't include stderr in c.log.  Depends on
> > the shell
> > > you
> > > >> > > use, you need to either add "&" or "2>&1".  See README for
> > > >> > details..
> > > >> > >
> > > >> > > A.Chan
> > > >> > >
> > > >> > > _______________________________________________
> > > >> > > mpich-discuss mailing list
> > > >> > > mpich-discuss at mcs.anl.gov
> > > >> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > >> > >
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