[mpich-discuss] [mvapich-discuss] Build problem with mvapich2-1.5 and Panfs driver for ROMIO

Thu Jul 15 14:13:21 CDT 2010

Adding @CPPFLAGS@ to the CFLAGS setting in src/mpi/romio/adio/ad_panfs/Makefile.in allows mvapich2 to
compile correctly with Panfs support in Romio.

Craig

On Jul 15, 2010, at 12:43 PM, Jonathan Perkins wrote:

> Thanks for the investigation Dave, that sounds like it could do the
> trick.  I'm not sure if RobL was added unless his address is hidden.
> 
> On Thu, Jul 15, 2010 at 12:20 PM, Dave Goodell <goodell at mcs.anl.gov> wrote:
>> [adding RobL]
>> 
>> It looks like a bug in "src/mpi/romio/adio/ad_panfs/Makefile.in".  If you compare it to the Makefile.in for ad_ufs, the ad_panfs version is missing an "CPPFLAGS=@CPPFLAGS@" entry, along with other related modifications.  The CPPFLAGS var is where the correct include for mpidpre.h comes from.
>> 
>> Unfortunately, I have to admit that I don't know anything about the state of the ad_panfs code or build system.
>> 
>> Rob: what's the right fix here?  Basically just make ad_panfs look like ad_ufs?
>> 
>> -Dave
>> 
>> On Jul 15, 2010, at 11:07 AM CDT, Jonathan Perkins wrote:
>> 
>>> The logs are attached.  Thanks for your help.
>>> 
>>> On Thu, Jul 15, 2010 at 11:18 AM, Dave Goodell <goodell at mcs.anl.gov> wrote:
>>>> It looks like the build system isn't putting "-Isrc/mpid/ch3/include" on the compile line.  There's also a chance that the configure step didn't fully complete, but I don't think that's likely.
>>>> 
>>>> Can you send us the c.txt, config.log, and m.txt (from "make V=1") as explained in the MPICH2 README?  Debugging 1.3a2 is preferable to 1.2.1p1.
>>>> 
>>>> -Dave
>>>> 
>>>> On Jul 15, 2010, at 9:17 AM CDT, Jonathan Perkins wrote:
>>>> 
>>>>> Hi, a user of mvapich2 reported this issue to us a few days ago.  I've
>>>>> looked into the issue a bit and didn't see an obvious fix.  I've been
>>>>> able to reproduce this issue as well as a very similar one with gcc
>>>>> with both mpich2-1.2.1p1 and mpich2-1.3a2.
>>>>> 
>>>>> The configuration that I've used with gcc is...
>>>>> Configuring MPICH2 version 1.3a2 with  '--enable-romio=yes'
>>>>> '--with-file-system=lustre+panfs'
>>>>> '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
>>>>> 
>>>>> The initial errors encountered during make is...
>>>>> make[5]: Entering directory
>>>>> `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
>>>>> gcc -O2  -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE
>>>>> -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE
>>>>> -D_FILE_OFFSET_BITS=64 -I.
>>>>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include
>>>>> -I../include -I../../include
>>>>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include
>>>>> -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>>>>> In file included from
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>>>>>                 from
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>>>>>                 from ad_panfs.h:15,
>>>>>                 from ad_panfs.c:9:
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:37:17:
>>>>> error: mpl.h: No such file or directory
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:126:21:
>>>>> error: mpidpre.h: No such file or directory
>>>>> In file included from
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
>>>>>                 from
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>>>>>                 from
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>>>>>                 from ad_panfs.h:15,
>>>>>                 from ad_panfs.c:9:
>>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:25:25:
>>>>> error: mpid_thread.h: No such file or directory
>>>>> 
>>>>> Is this a known issue?  Does a patch already exist or should I file a
>>>>> bug report.  Thanks in advance for any help that you can provide.
>>>>> 
>>>>> On Mon, Jul 12, 2010 at 11:31 AM, Craig Tierney <Craig.Tierney at noaa.gov> wrote:
>>>>>> I just pulled down mvapich2-1.5 and tried to build with Panfs support.  It did not
>>>>>> build.  Here are the error messages:
>>>>>> 
>>>>>> make[5]: Entering directory `/misc/whome/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs'
>>>>>> icc -g -O2 -DNDEBUG -O2  -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../include -I../include -I../../include -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>>>>>> /home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h(143): catastrophic error: could not open source file "mpidpre.h"
>>>>>>  #include "mpidpre.h"
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> Here is how I configured the build:
>>>>>> 
>>>>>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort F90=ifort         --with-rdma=gen2         --prefix=/opt/mvapich2/1.5-intel-11.1         --enable-romio=yes --with-file-system=lustre+panfs
>>>>>> 
>>>>>> 
>>>>>> I tried hacking the links in, the dependencies are complicated.
>>>>>> 
>>>>>> Thanks,
>>>>>> Craig
>>>>>> _______________________________________________
>>>>>> mvapich-discuss mailing list
>>>>>> mvapich-discuss at cse.ohio-state.edu
>>>>>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>>>> 
>>>>> --
>>>>> Jonathan Perkins
>>>>> _______________________________________________
>>>>> mpich-discuss mailing list
>>>>> mpich-discuss at mcs.anl.gov
>>>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>> 
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>>>> 
>>> 
>>> 
>>> 
>>> --
>>> Jonathan Perkins
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>> 
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> 
> 
> 
> -- 
> Jonathan Perkins
> 
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