[mpich-discuss] [mvapich-discuss] Build problem with mvapich2-1.5 and Panfs driver for ROMIO
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Thu Jul 15 13:43:11 CDT 2010
Thanks for the investigation Dave, that sounds like it could do the
trick. I'm not sure if RobL was added unless his address is hidden.
On Thu, Jul 15, 2010 at 12:20 PM, Dave Goodell <goodell at mcs.anl.gov> wrote:
> [adding RobL]
>
> It looks like a bug in "src/mpi/romio/adio/ad_panfs/Makefile.in". If you compare it to the Makefile.in for ad_ufs, the ad_panfs version is missing an "CPPFLAGS=@CPPFLAGS@" entry, along with other related modifications. The CPPFLAGS var is where the correct include for mpidpre.h comes from.
>
> Unfortunately, I have to admit that I don't know anything about the state of the ad_panfs code or build system.
>
> Rob: what's the right fix here? Basically just make ad_panfs look like ad_ufs?
>
> -Dave
>
> On Jul 15, 2010, at 11:07 AM CDT, Jonathan Perkins wrote:
>
>> The logs are attached. Thanks for your help.
>>
>> On Thu, Jul 15, 2010 at 11:18 AM, Dave Goodell <goodell at mcs.anl.gov> wrote:
>>> It looks like the build system isn't putting "-Isrc/mpid/ch3/include" on the compile line. There's also a chance that the configure step didn't fully complete, but I don't think that's likely.
>>>
>>> Can you send us the c.txt, config.log, and m.txt (from "make V=1") as explained in the MPICH2 README? Debugging 1.3a2 is preferable to 1.2.1p1.
>>>
>>> -Dave
>>>
>>> On Jul 15, 2010, at 9:17 AM CDT, Jonathan Perkins wrote:
>>>
>>>> Hi, a user of mvapich2 reported this issue to us a few days ago. I've
>>>> looked into the issue a bit and didn't see an obvious fix. I've been
>>>> able to reproduce this issue as well as a very similar one with gcc
>>>> with both mpich2-1.2.1p1 and mpich2-1.3a2.
>>>>
>>>> The configuration that I've used with gcc is...
>>>> Configuring MPICH2 version 1.3a2 with '--enable-romio=yes'
>>>> '--with-file-system=lustre+panfs'
>>>> '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
>>>>
>>>> The initial errors encountered during make is...
>>>> make[5]: Entering directory
>>>> `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
>>>> gcc -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE
>>>> -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE
>>>> -D_FILE_OFFSET_BITS=64 -I.
>>>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include
>>>> -I../include -I../../include
>>>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include
>>>> -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>>>> In file included from
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>>>> from
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>>>> from ad_panfs.h:15,
>>>> from ad_panfs.c:9:
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:37:17:
>>>> error: mpl.h: No such file or directory
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:126:21:
>>>> error: mpidpre.h: No such file or directory
>>>> In file included from
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
>>>> from
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>>>> from
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>>>> from ad_panfs.h:15,
>>>> from ad_panfs.c:9:
>>>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:25:25:
>>>> error: mpid_thread.h: No such file or directory
>>>>
>>>> Is this a known issue? Does a patch already exist or should I file a
>>>> bug report. Thanks in advance for any help that you can provide.
>>>>
>>>> On Mon, Jul 12, 2010 at 11:31 AM, Craig Tierney <Craig.Tierney at noaa.gov> wrote:
>>>>> I just pulled down mvapich2-1.5 and tried to build with Panfs support. It did not
>>>>> build. Here are the error messages:
>>>>>
>>>>> make[5]: Entering directory `/misc/whome/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs'
>>>>> icc -g -O2 -DNDEBUG -O2 -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../include -I../include -I../../include -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>>>>> /home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h(143): catastrophic error: could not open source file "mpidpre.h"
>>>>> #include "mpidpre.h"
>>>>>
>>>>>
>>>>>
>>>>> Here is how I configured the build:
>>>>>
>>>>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort F90=ifort --with-rdma=gen2 --prefix=/opt/mvapich2/1.5-intel-11.1 --enable-romio=yes --with-file-system=lustre+panfs
>>>>>
>>>>>
>>>>> I tried hacking the links in, the dependencies are complicated.
>>>>>
>>>>> Thanks,
>>>>> Craig
>>>>> _______________________________________________
>>>>> mvapich-discuss mailing list
>>>>> mvapich-discuss at cse.ohio-state.edu
>>>>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>>>
>>>> --
>>>> Jonathan Perkins
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>>
>>
>>
>> --
>> Jonathan Perkins
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--
Jonathan Perkins
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