[mpich-discuss] [mvapich-discuss] Build problem with mvapich2-1.5 and Panfs driver for ROMIO
Jonathan Perkins
perkinjo at cse.ohio-state.edu
Thu Jul 15 11:07:39 CDT 2010
The logs are attached. Thanks for your help.
On Thu, Jul 15, 2010 at 11:18 AM, Dave Goodell <goodell at mcs.anl.gov> wrote:
> It looks like the build system isn't putting "-Isrc/mpid/ch3/include" on the compile line. There's also a chance that the configure step didn't fully complete, but I don't think that's likely.
>
> Can you send us the c.txt, config.log, and m.txt (from "make V=1") as explained in the MPICH2 README? Debugging 1.3a2 is preferable to 1.2.1p1.
>
> -Dave
>
> On Jul 15, 2010, at 9:17 AM CDT, Jonathan Perkins wrote:
>
>> Hi, a user of mvapich2 reported this issue to us a few days ago. I've
>> looked into the issue a bit and didn't see an obvious fix. I've been
>> able to reproduce this issue as well as a very similar one with gcc
>> with both mpich2-1.2.1p1 and mpich2-1.3a2.
>>
>> The configuration that I've used with gcc is...
>> Configuring MPICH2 version 1.3a2 with '--enable-romio=yes'
>> '--with-file-system=lustre+panfs'
>> '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
>>
>> The initial errors encountered during make is...
>> make[5]: Entering directory
>> `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
>> gcc -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE
>> -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE
>> -D_FILE_OFFSET_BITS=64 -I.
>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include
>> -I../include -I../../include
>> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include
>> -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>> In file included from
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>> from
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>> from ad_panfs.h:15,
>> from ad_panfs.c:9:
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:37:17:
>> error: mpl.h: No such file or directory
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:126:21:
>> error: mpidpre.h: No such file or directory
>> In file included from
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
>> from
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>> from
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>> from ad_panfs.h:15,
>> from ad_panfs.c:9:
>> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:25:25:
>> error: mpid_thread.h: No such file or directory
>>
>> Is this a known issue? Does a patch already exist or should I file a
>> bug report. Thanks in advance for any help that you can provide.
>>
>> On Mon, Jul 12, 2010 at 11:31 AM, Craig Tierney <Craig.Tierney at noaa.gov> wrote:
>>> I just pulled down mvapich2-1.5 and tried to build with Panfs support. It did not
>>> build. Here are the error messages:
>>>
>>> make[5]: Entering directory `/misc/whome/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs'
>>> icc -g -O2 -DNDEBUG -O2 -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../include -I../include -I../../include -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>>> /home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h(143): catastrophic error: could not open source file "mpidpre.h"
>>> #include "mpidpre.h"
>>>
>>>
>>>
>>> Here is how I configured the build:
>>>
>>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort F90=ifort --with-rdma=gen2 --prefix=/opt/mvapich2/1.5-intel-11.1 --enable-romio=yes --with-file-system=lustre+panfs
>>>
>>>
>>> I tried hacking the links in, the dependencies are complicated.
>>>
>>> Thanks,
>>> Craig
>>> _______________________________________________
>>> mvapich-discuss mailing list
>>> mvapich-discuss at cse.ohio-state.edu
>>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
>>
>> --
>> Jonathan Perkins
>> _______________________________________________
>> mpich-discuss mailing list
>> mpich-discuss at mcs.anl.gov
>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
> _______________________________________________
> mpich-discuss mailing list
> mpich-discuss at mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
>
--
Jonathan Perkins
-------------- next part --------------
Configuring MPICH2 version 1.3a2 with '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
Running on system: Linux z1.nowlab.cis.ohio-state.edu 2.6.18-128.7.1.el5-lustre.1.8.1.1smp-cust #1 SMP Mon Feb 1 13:24:29 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
Executing mpich2prereq in /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3 with
Executing mpich2prereq in /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis
configure: ===== configuring src/mpl =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
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checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
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checking for suffix of object files... o
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checking whether gcc accepts -g... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with src/mpl configure =====
checking for grep that handles long lines and -e... /bin/grep
checking for fgrep... /bin/grep -F
configure: ===== configuring src/openpa =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
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checking whether build environment is sane... yes
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checking whether gcc accepts -g... yes
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checking whether to enable assertions... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with src/openpa configure =====
sourcing /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/pm/hydra/mpich2prereq
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
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checking whether g77 accepts -g... yes
checking whether Fortran 77 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from g77... -v
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checking whether g77 accepts the FLIBS found by autoconf... yes
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checking what libraries are needed to link Fortran programs with C routines that use stdio... none
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checking for which Fortran libraries are needed to link C with Fortran... none
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checking whether the Fortran 90 compiler (f95 ) works... yes
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checking for Fortran 90 module include flag... -I
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checking whether clock skew breaks make... no
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checking whether make sets CFLAGS... yes
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checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
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checking whether __attribute__ allowed... yes
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checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
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checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... sixteen
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... sixteen
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
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checking if double alignment breaks rules, find actual alignment... no
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checking size of long... 8
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checking size of long long... 8
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checking size of float... 4
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checking size of wchar_t... 4
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checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
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checking for _Bool... yes
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checking for size of Fortran type integer... 4
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checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... no
checking for C type matching Fortran integer... int
checking for size of MPI_Status... 20
checking for values of Fortran logicals... True is 1 and False is 0
checking for Fortran 90 integer kind for 8-byte integers... 8
checking whether real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking how to run the C++ preprocessor... c++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 32
checking if char * pointers use byte addresses... yes
checking for alignment restrictions on ... no
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checking size of MPIR_Bsend_data_t... 88
checking for gcc __asm__ and pentium cmpxchgl instruction... no
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes
checking for gcc __asm__ and IA64 xchg4 instruction... no
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checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for gettimeofday... yes
sourcing /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: ===== configuring src/mpid/ch3 =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of void *... 8
configure: ===== configuring channels/nemesis =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' 'CC=gcc' CFLAGS=' -O2' LDFLAGS=' ' LIBS='-lpthread ' CPPFLAGS=' -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... yes
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... yes
checking whether we can use struct ifconf... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating nemesis/Makefile
config.status: creating nemesis/src/Makefile
config.status: creating nemesis/utils/Makefile
config.status: creating nemesis/utils/replacements/Makefile
config.status: creating nemesis/utils/monitor/Makefile
config.status: creating nemesis/netmod/Makefile
config.status: creating nemesis/netmod/elan/Makefile
config.status: creating nemesis/netmod/gm/Makefile
config.status: creating nemesis/netmod/mx/Makefile
config.status: creating nemesis/netmod/tcp/Makefile
config.status: creating nemesis/netmod/ib/Makefile
config.status: creating nemesis/netmod/psm/Makefile
config.status: creating nemesis/netmod/newmad/Makefile
config.status: creating nemesis/netmod/none/Makefile
config.status: creating localdefs
config.status: creating nemesis/include/mpid_nem_net_module_defs.h
config.status: creating nemesis/src/mpid_nem_net_array.c
config.status: creating include/mpidi_ch3i_nemesis_conf.h
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with channels/nemesis configure =====
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating channels/Makefile
config.status: creating util/ftb/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: executing default-1 commands
copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with src/mpid/ch3 configure =====
configure: ===== configuring src/mpi/romio =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio
Configuring with args --enable-romio=yes --with-file-system=lustre+panfs --prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install
checking for architecture... LINUX
ROMIO home directory is /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for memalign... yes
checking Fortran external names
Fortran externals are lower case and have two trailing underscores
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for sys/types.h... (cached) yes
checking for u_char... yes
checking for u_short... yes
checking for u_int... yes
checking for u_long... yes
checking sys/attr.h usability... no
checking sys/attr.h presence... no
checking for sys/attr.h... no
checking size of int... 4
checking size of void *... 8
checking for int large enough for pointers... no
checking size of long long... 8
checking for extension for Fortran 90 programs... f90
checking for Fortran 90 KIND parameter for 8-byte integers... 8
checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... yes
checking that the compiler correctly implements weak symbols... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs lustre panfs
checking lustre/lustre_user.h usability... yes
checking lustre/lustre_user.h presence... yes
checking for lustre/lustre_user.h... yes
checking for library containing aio_write... -lrt
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... yes
checking if sys/aio.h exists and can be compiled... no
checking whether aio routines can be used... yes
checking for obsolete two-argument aio_write... no
checking for obsolete two-argument aio_suspend... no
checking for aio_fildes member of aiocb structure... yes
checking for aio_whence member of aiocb structure... no
checking for aio_handle member of aiocb structure... no
checking for aio_reqprio member of aiocb structure... yes
checking for aio_sigevent member of aiocb structure... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
checking whether off64_t is an scalar type... yes
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for lseek64... yes
checking whether lseek64 needs a declaration... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
setting SYSDEP_INC to
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
setting CC to gcc
setting F77 to g77
setting TEST_CC to /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc
setting TEST_F77 to /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77
setting CFLAGS to -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to
setting USER_FFLAGS to
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi-io/Makefile
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating adio/common/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating adio/ad_nfs/Makefile
config.status: creating adio/ad_ufs/Makefile
config.status: creating adio/ad_bgl/Makefile
config.status: creating adio/ad_bglockless/Makefile
config.status: creating adio/ad_panfs/Makefile
config.status: creating adio/ad_xfs/Makefile
config.status: creating adio/ad_sfs/Makefile
config.status: creating adio/ad_pfs/Makefile
config.status: creating adio/ad_testfs/Makefile
config.status: creating adio/ad_pvfs/Makefile
config.status: creating adio/ad_pvfs2/Makefile
config.status: creating adio/ad_gridftp/Makefile
config.status: creating adio/ad_lustre/Makefile
config.status: creating adio/ad_zoidfs/Makefile
config.status: creating mpi-io/fortran/Makefile
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating mpi-io/glue/mpich2/Makefile
config.status: creating mpi-io/glue/mpich1/Makefile
config.status: creating mpi-io/glue/default/Makefile
config.status: creating common/dataloop/Makefile
config.status: creating adio/include/romioconf.h
config.status: executing default-1 commands
configure: WARNING: unrecognized options: --enable-romio
configure: ===== done with src/mpi/romio configure =====
configure: ===== configuring src/pmi/simple =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/pmi/simple/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
RUNNING CONFIGURE FOR THE SIMPLE PMI
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for strings.h... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncasecmp... yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/socket.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking for socket... yes
checking for setsockopt... yes
checking for gethostbyname... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
checking whether struct hostent contains h_addr_list... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating pmiconf.h
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with src/pmi/simple configure =====
configure: ===== configuring src/pm/hydra =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/pm/hydra/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking for doxygen... /usr/bin/doxygen
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/types.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sys/stat.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ifaddrs.h usability... yes
checking ifaddrs.h presence... yes
checking for ifaddrs.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking for socket in -lsocket... no
checking for gethostbyname in -lnsl... yes
checking for gettimeofday... yes
checking for time... yes
checking for strdup... yes
checking for sigaction... yes
checking for signal... yes
checking for usleep... yes
checking for alloca... no
checking for unsetenv... yes
checking for strerror... yes
checking for strsignal... yes
checking for stat... yes
checking for getifaddrs... yes
checking for fcntl... yes
checking for alarm... yes
checking for environ in unistd.h... no
checking for manually declared extern environ... yes
checking boot-strap server... ssh,slurm,persist
checking resource management kernel... dummy,pbs
checking process manager... pmiserv
checking user interface... mpich
checking process binding library... plpa
configure: ===== configuring tools/bind/plpa/plpa =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/pm/hydra/tools/bind/plpa/plpa/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' 'CC=gcc' CFLAGS=' -O2 ' LDFLAGS=' -lnsl' LIBS='' CPPFLAGS=' -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers'
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for PLPA version... 1.3.2
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking whether to enable "picky" compiler mode... no (default)
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking for bison... bison -y
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for syscall... yes
checking sys/syscall.h usability... yes
checking sys/syscall.h presence... yes
checking for sys/syscall.h... yes
checking for unistd.h... (cached) yes
checking for __NR_sched_setaffinity... yes
checking for __NR_sched_getaffinity... yes
checking for PLPA building mode... standalone
checking if want PLPA maintainer support... disabled
checking for PLPA config prefix... .
checking for PLPA symbol prefix... plpa_
checking valgrind/valgrind.h usability... yes
checking valgrind/valgrind.h presence... yes
checking for valgrind/valgrind.h... yes
checking for VALGRIND_CHECK_MEM_IS_ADDRESSABLE... yes
checking whether to build PLPA executables... yes
checking for inline... inline
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating ./config.status
config.status: creating ./Makefile
config.status: creating ./config/Makefile
config.status: creating ./src/Makefile
config.status: creating ./src/libplpa/Makefile
config.status: creating ./src/plpa-info/Makefile
config.status: creating ./src/plpa-taskset/Makefile
config.status: creating ./src/libplpa/plpa_config.h
config.status: creating ./src/libplpa/plpa.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with tools/bind/plpa/plpa configure =====
checking if plpa works correctly... yes
checking checkpointing library... none
checking demux engine... poll,select,port
checking for poll... yes
checking for select... yes
checking debugging support... none
checking error checking... yes
checking warnings... no
checking profiling... yes
checking whether the compiler allows __VA_ARGS__... yes
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... yes
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating tools/bootstrap/include/bsci.h
config.status: creating tools/rmk/src/rmki_init.c
config.status: creating tools/rmk/include/rmki.h
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: ===== done with src/pm/hydra configure =====
configure: ===== configuring src/mpe2 =====
executing: /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/configure '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
Configuring MPE Profiling System with '--enable-romio=yes' '--with-file-system=lustre+panfs' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
This MPE build is part of the MPICH2 build
checking for leftover Makefiles in subpackages ... none
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether MPI_CC has been set ... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking whether MPI_F77 has been set ... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77
checking how to get verbose linking output from g77... -v
checking for Fortran 77 libraries of g77... -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lrt -lpthread -lfrtbegin -lg2c -lm
checking whether g77 accepts the FLIBS found by autoconf... yes
checking whether C can link with -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lrt -lpthread -lfrtbegin -lg2c -lm... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking whether Fortran 77 and C objects are compatible... yes
checking for Fortran 77 name mangling... lower doubleunderscore
checking what libraries are needed to link Fortran programs with C routines that use stdio... none
checking for Fortran 77 flag for library directories... -L
checking for include directory flag for Fortran... -I
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ranlib... ranlib
checking whether install breaks libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/mpetestlink
config.status: creating sbin/mpetestexec
config.status: creating sbin/mpetestexeclog
config.status: creating sbin/mpeinstall
config.status: creating sbin/mpecheckinstall
config.status: WARNING: 'sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting
config.status: creating sbin/mpecheckbuild
config.status: creating etc/mpe_help.conf
config.status: creating etc/mpe_f77env.conf
config.status: creating mpe_conf.h
config.status: executing default-1 commands
=== configuring in src/misc (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/misc)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/misc
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for dbx... no
checking for gdb... /usr/bin/gdb
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sysinfo... yes
checking for uname... yes
checking for gethostbyname... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for sys/types.h... (cached) yes
checking for sighandler_t... no
checking for kill... yes
checking whether kill needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/dbxerr.c
config.status: creating mpe_misc_conf.h
=== configuring in src/callstack (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/callstack)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/callstack
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
checking for fdopen... yes
checking whether fdopen needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/mpe_callstack.h
config.status: creating etc/mpe_callstack_ldflags.conf
config.status: creating bin/bt2line
config.status: creating mpe_callstack_conf.h
config.status: executing default-1 commands
=== configuring in src/logging (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/logging)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/logging
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for header that defines C99 integer types, intXX_t ... <stdint.h>
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines the PRIdXX macros ... yes
checking if <stdint.h> can be behind system headers ... yes
checking size of void *... 8
checking for address-sized integer ... CLOG_int64_t
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for srand48... yes
checking whether srand48 needs a declaration... no
checking for lrand48... yes
checking whether lrand48 needs a declaration... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE
checking for O_BINARY for open() ... no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_mutex_lock in -lpthread... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/clog_inttypes.h
config.status: creating include/mpi_null.h
config.status: creating include/mpe_log_thread.h
config.status: creating etc/mpe_log.conf
config.status: creating etc/mpe_nolog.conf
config.status: creating etc/mpe_log_postlib.conf
config.status: creating mpe_logging_conf.h
=== configuring in src/wrappers (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/wrappers)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/wrappers
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdarg is correct... yes
checking if compiler accepts prototypes ... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for safe PMPI invocations ... no
checking for the value of MPI_STATUS_SIZE ... 5
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_f77env.conf
config.status: creating etc/mpe_mpilog.conf
config.status: creating etc/mpe_mpitrace.conf
config.status: creating mpe_wrappers_conf.h
=== configuring in src/graphics (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/graphics)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/graphics
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for X... no
configure: WARNING: Could not find appropriate X windows libraries. MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure!
=== configuring in src/collchk (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/collchk)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/collchk
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working alloca.h... yes
checking for alloca... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_mpicheck.conf
config.status: creating mpe_collchk_conf.h
=== configuring in src/slog2sdk (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/slog2sdk)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=.
checking for current directory name... /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpe2/src/slog2sdk
Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' 'MPI_CC=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpicc' 'MPI_F77=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/bin/mpif77' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers' 'F77=g77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=.'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking if CLASSPATH is set... no, good to go
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for java in user's PATH... not found
checking for java in user's PATH... not found
configure: WARNING: No Java Virtual Machine can be found anywhere!
MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" have been configured
configure: ===== done with src/mpe2 configure =====
checking size of OPA_ptr_t... 8
checking the sizeof MPI_Offset... 8
checking whether the Fortran Offset type works with Fortran77... yes
checking whether the Fortran Offset type works with Fortran90... yes
Running Configure for F90 Type routines
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
checking for cc... gcc
checking whether the C compiler sets its return status correctly... yes
checking for an ANSI C-conforming const... no
checking that f works as the extension for Fortran 90 program... yes
checking for Fortran 90 compiler default output file name... a.out
checking whether the Fortran 90 compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU Fortran 90 compiler... yes
checking whether f95 accepts -g... yes
checking whether Fortran 90 accepts f90 suffix... yes
checking for precision and range of reals... 6 , 37
checking for precision and range of double precision... 15 , 307
checking for range of integers... 9
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking for Fortran 77 name mangling... lower doubleunderscore
checking for available integer kinds and ranges... 2 , 1, 4 , 2, 9 , 4, 18 , 8,
{ 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 },
configure: creating ./config.status
config.status: creating mpif90model.h
configure: WARNING: unrecognized options: --enable-romio, --with-file-system
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/mpich2info.h
config.status: creating mpich2-doxygen
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/Makefile
config.status: creating src/binding/cxx/Makefile
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/Makefile
config.status: creating src/binding/f77/mpif.h
config.status: creating src/binding/f77/setbotf.f
config.status: creating src/binding/f77/setbot.c
config.status: creating src/binding/f90/Makefile
config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/packaging/Makefile
config.status: creating src/packaging/pkgconfig/mpich2-ch3.pc
config.status: creating src/packaging/pkgconfig/Makefile
config.status: creating src/packaging/envmods/mpich2.module
config.status: WARNING: 'src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting
config.status: creating src/packaging/envmods/Makefile
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc
config.status: creating src/env/mpicc.conf
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx
config.status: creating src/env/mpicxx.conf
config.status: creating src/env/mpicxx.bash
config.status: creating src/env/mpif77
config.status: creating src/env/mpif77.conf
config.status: creating src/env/mpif77.bash
config.status: creating src/env/mpif90
config.status: creating src/env/mpif90.conf
config.status: creating src/env/mpif90.bash
config.status: creating src/env/parkill
config.status: creating src/env/Makefile
config.status: creating src/util/createshlib
config.status: creating src/mpi/Makefile
config.status: creating src/mpi/attr/Makefile
config.status: creating src/mpi/coll/Makefile
config.status: creating src/mpi/comm/Makefile
config.status: creating src/mpi/datatype/Makefile
config.status: creating src/mpi/debugger/Makefile
config.status: creating src/mpi/errhan/Makefile
config.status: creating src/mpi/group/Makefile
config.status: creating src/mpi/init/Makefile
config.status: creating src/mpi/misc/Makefile
config.status: creating src/mpi/pt2pt/Makefile
config.status: creating src/mpi/rma/Makefile
config.status: creating src/mpi/spawn/Makefile
config.status: creating src/mpi/timer/Makefile
config.status: creating src/mpi/topo/Makefile
config.status: creating src/mpid/Makefile
config.status: creating src/mpid/common/Makefile
config.status: creating src/mpid/common/datatype/Makefile
config.status: creating src/mpid/common/datatype/dataloop/Makefile
config.status: creating src/pm/Makefile
config.status: creating src/pmi/Makefile
config.status: creating src/pmi/simple/Makefile
config.status: creating src/nameserv/Makefile
config.status: creating src/nameserv/file/Makefile
config.status: creating src/nameserv/mpd/Makefile
config.status: creating src/nameserv/pmi/Makefile
config.status: creating src/nameserv/test/Makefile
config.status: creating src/util/Makefile
config.status: creating src/util/info/Makefile
config.status: creating src/util/instrm/Makefile
config.status: creating src/util/thread/Makefile
config.status: creating src/util/mem/Makefile
config.status: creating src/util/msgs/Makefile
config.status: creating src/util/param/Makefile
config.status: creating src/util/dbg/Makefile
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/util/osserv/Makefile
config.status: creating src/util/procmap/Makefile
config.status: creating src/util/other/Makefile
config.status: creating src/include/mpi.h
config.status: creating test/Makefile
config.status: creating test/util/Makefile
config.status: creating test/basic/Makefile
config.status: creating test/commands/Makefile
config.status: creating test/commands/cmdtests
config.status: creating test/mpid/Makefile
config.status: creating test/mpid/ch3/Makefile
config.status: creating test/util/timer/Makefile
config.status: creating examples/Makefile
config.status: creating examples/f77/Makefile
config.status: creating examples/f90/Makefile
config.status: creating examples/cxx/Makefile
config.status: creating src/util/logging/Makefile
config.status: creating src/util/logging/common/Makefile
config.status: creating doc/Makefile
config.status: creating doc/mansrc/Makefile
config.status: creating doc/mansrc/createhtmlindex
config.status: creating doc/refman/Makefile
config.status: creating doc/installguide/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating doc/logging/Makefile
config.status: creating doc/design/Makefile
config.status: creating doc/smpd/Makefile
config.status: creating doc/windev/Makefile
config.status: creating src/include/mpichconf.h
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
config.status: executing default-6 commands
config.status: executing default-7 commands
config.status: executing default-8 commands
Updating dependency directories .deps
config.status: executing default-9 commands
config.status: executing default-10 commands
config.status: executing default-11 commands
config.status: executing default-12 commands
config.status: executing default-13 commands
=== configuring in test/mpi (/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/test/mpi)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install' '--enable-romio=yes' '--with-file-system=lustre+panfs' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR MPI TESTS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... yes
checking whether f95 accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for memory.h... (cached) yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for library containing pthread_create... -lpthread
checking for library containing pthread_barrier_init... none required
checking for pthread_create... yes
checking for pthread_yield... yes
checking for pthread_barrier_init... yes
checking for pthread_barrier_wait... yes
Configuring tests for MPICH2
checking whether struct hostent contains h_addr_list... no
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking for Fortran 77 name mangling... lower doubleunderscore
checking for Fortran libraries needed for getarg... none needed
checking whether Fortran has pointer declaration... no
checking that f works as the extension for Fortran 90 program... yes
checking whether we are using the GNU Fortran 90 compiler... (cached) yes
checking whether f95 accepts -g... (cached) yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (f95 ) works... yes
checking whether the Fortran 90 compiler (f95 ) is a cross-compiler... no
checking whether Fortran 90 has Cray-style pointer declaration... no
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking size of void *... 8
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... long
checking for perl... /usr/bin/perl
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating rma/Makefile
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
config.status: creating f77/datatype/typeaints.h
config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
config.status: creating f77/topo/Makefile
config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
config.status: creating f90/comm/Makefile
config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
config.status: creating f90/rma/Makefile
config.status: creating f90/info/Makefile
config.status: creating f90/spawn/Makefile
config.status: creating f90/timer/Makefile
config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
config.status: creating cxx/io/Makefile
config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
config.status: creating threads/spawn/Makefile
config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
config.status: creating errors/basic/Makefile
config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
config.status: creating errors/spawn/Makefile
config.status: creating errors/topo/Makefile
config.status: creating errors/io/Makefile
config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f90/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating include/mpitestconf.h
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
Configuration completed.
-------------- next part --------------
Beginning make
Using variables CC='gcc' CFLAGS=' -O2' LDFLAGS=' ' AR='ar' FC='g77' F90='f95' FFLAGS=' -O2' F90FLAGS=' -O2' CXX='c++' CPPFLAGS=' -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/locks -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/util/wrappers'
make all-local
make[1]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2'
make[1]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2'
make[1]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl'
make[1]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa'
Making all in src
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src'
make all-am
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src'
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/src'
Making all in test
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/test'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa/test'
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa'
make[1]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/openpa'
make[1]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src'
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpl'
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common'
make[4]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype'
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype/dataloop'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype/dataloop'
make all-local
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype'
make[4]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common/datatype'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/common'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3'
make[4]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels'
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis'
make[6]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis'
make[7]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/src'
make[7]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/src'
make[7]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/netmod'
make[8]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/netmod/tcp'
make[8]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/netmod/tcp'
make[7]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/netmod'
make[7]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils'
make[8]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor'
make[8]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor'
make[8]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/replacements'
make[8]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils/replacements'
make[7]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis/utils'
make[6]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/nemesis'
make[6]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/src'
make[6]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis/src'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels/nemesis'
make[4]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/channels'
make[4]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/src'
make[4]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/src'
make[4]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/util'
make[4]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3/util'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid/ch3'
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpid'
make[2]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/attr'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/attr'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/coll'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/coll'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/comm'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/comm'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/datatype'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/datatype'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/errhan'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/errhan'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/group'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/group'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/init'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/init'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/misc'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/misc'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/pt2pt'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/pt2pt'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/rma'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/rma'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/spawn'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/spawn'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/timer'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/timer'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/topo'
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/topo'
make[3]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio'
make mpiolib
make[4]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio'
compiling ROMIO in directory mpi-io
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/mpi-io'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/mpi-io'
compiling ROMIO in directory adio/common
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/common'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/common'
compiling ROMIO in directory mpi-io/glue/mpich2
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/mpi-io/glue/mpich2'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/mpi-io/glue/mpich2'
compiling ROMIO in directory adio/ad_testfs
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_testfs'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_testfs'
compiling ROMIO in directory adio/ad_lustre
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_lustre'
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_lustre'
compiling ROMIO in directory adio/ad_panfs
make[5]: Entering directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
gcc -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include -I../include -I../../include -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include -I../../../../include -I/opt/panfs/include -c ad_panfs.c
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:37:17: error: mpl.h: No such file or directory
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:126:21: error: mpidpre.h: No such file or directory
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:25:25: error: mpid_thread.h: No such file or directory
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:58: error: expected specifier-qualifier-list before ?MPID_Thread_tls_t?
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:1024: error: expected declaration specifiers or ?...? before ?MPID_VCR?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:1103: error: expected specifier-qualifier-list before ?MPID_VCRT?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:1399: error: expected specifier-qualifier-list before ?MPID_PROGRESS_STATE_DECL?
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3317: error: expected declaration specifiers or ?...? before ?MPID_VCRT?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3322: error: expected ?)? before ?vcrt?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3332: error: expected ?)? before ?vcrt?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3337: error: expected ?)? before ?vcrt?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3342: error: expected ?)? before ?orig_vcr?
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3354: error: expected ?)? before ?vcr?
In file included from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
from /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
from ad_panfs.h:15,
from ad_panfs.c:9:
/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:3383:22: error: mpidpost.h: No such file or directory
ad_panfs.c:16: warning: initialization from incompatible pointer type
ad_panfs.c:20: warning: initialization from incompatible pointer type
ad_panfs.c:21: warning: initialization from incompatible pointer type
ad_panfs.c:22: warning: initialization from incompatible pointer type
ad_panfs.c:23: warning: initialization from incompatible pointer type
ad_panfs.c:25: warning: initialization from incompatible pointer type
ad_panfs.c:27: warning: initialization from incompatible pointer type
ad_panfs.c:33: warning: initialization from incompatible pointer type
ad_panfs.c:35: warning: initialization from incompatible pointer type
ad_panfs.c:37: warning: initialization from incompatible pointer type
ad_panfs.c:39: warning: initialization from incompatible pointer type
ad_panfs.c:40: warning: initialization from incompatible pointer type
ad_panfs.c:41: warning: initialization from incompatible pointer type
make[5]: *** [ad_panfs.o] Error 1
make[5]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
make[4]: *** [mpiolib] Error 1
make[4]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio'
make[3]: *** [mpio] Error 2
make[3]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio'
make[2]: *** [all-redirect] Error 1
make[2]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi'
make[1]: *** [all-redirect] Error 2
make[1]: Leaving directory `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src'
make: *** [all-redirect] Error 2
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