[mpich-discuss] [mvapich-discuss] Build problem with mvapich2-1.5 and Panfs driver for ROMIO

[Dave Goodell]

It looks like the build system isn't putting "-Isrc/mpid/ch3/include" on the compile line.  There's also a chance that the configure step didn't fully complete, but I don't think that's likely.

Can you send us the c.txt, config.log, and m.txt (from "make V=1") as explained in the MPICH2 README?  Debugging 1.3a2 is preferable to 1.2.1p1.

-Dave

On Jul 15, 2010, at 9:17 AM CDT, Jonathan Perkins wrote:

> Hi, a user of mvapich2 reported this issue to us a few days ago.  I've
> looked into the issue a bit and didn't see an obvious fix.  I've been
> able to reproduce this issue as well as a very similar one with gcc
> with both mpich2-1.2.1p1 and mpich2-1.3a2.
> 
> The configuration that I've used with gcc is...
> Configuring MPICH2 version 1.3a2 with  '--enable-romio=yes'
> '--with-file-system=lustre+panfs'
> '--prefix=/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/install'
> 
> The initial errors encountered during make is...
> make[5]: Entering directory
> `/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs'
> gcc -O2  -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE
> -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE
> -D_FILE_OFFSET_BITS=64 -I.
> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include
> -I../include -I../../include
> -I/tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include
> -I../../../../include -I/opt/panfs/include -c ad_panfs.c
> In file included from
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>                 from
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>                 from ad_panfs.h:15,
>                 from ad_panfs.c:9:
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:37:17:
> error: mpl.h: No such file or directory
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:126:21:
> error: mpidpre.h: No such file or directory
> In file included from
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h:145,
>                 from
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adioi.h:809,
>                 from
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../include/adio.h:427,
>                 from ad_panfs.h:15,
>                 from ad_panfs.c:9:
> /tmp/perkinjo/panfs/gcc/mpich2-1.3a2/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimplthread.h:25:25:
> error: mpid_thread.h: No such file or directory
> 
> Is this a known issue?  Does a patch already exist or should I file a
> bug report.  Thanks in advance for any help that you can provide.
> 
> On Mon, Jul 12, 2010 at 11:31 AM, Craig Tierney <Craig.Tierney at noaa.gov> wrote:
>> I just pulled down mvapich2-1.5 and tried to build with Panfs support.  It did not
>> build.  Here are the error messages:
>> 
>> make[5]: Entering directory `/misc/whome/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs'
>> icc -g -O2 -DNDEBUG -O2  -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I. -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../include -I../include -I../../include -I/home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include -I../../../../include -I/opt/panfs/include -c ad_panfs.c
>> /home/admin/hjet/software/opt/mvapich/mvapich2-1.5/src/mpi/romio/adio/ad_panfs/../../../../include/mpiimpl.h(143): catastrophic error: could not open source file "mpidpre.h"
>>  #include "mpidpre.h"
>> 
>> 
>> 
>> Here is how I configured the build:
>> 
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort F90=ifort         --with-rdma=gen2         --prefix=/opt/mvapich2/1.5-intel-11.1         --enable-romio=yes --with-file-system=lustre+panfs
>> 
>> 
>> I tried hacking the links in, the dependencies are complicated.
>> 
>> Thanks,
>> Craig
>> _______________________________________________
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>> mvapich-discuss at cse.ohio-state.edu
>> http://mail.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss
> 
> -- 
> Jonathan Perkins
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