[mpich-discuss] Problems with configuring MPICH with cross compiler

Wed Nov 11 18:41:09 CST 2009

I realize that I set the option --with-atomic-primitives=no to get through
the configuration. " OpenPA can emulate atomic primitives using
locks by specifying --with-atomic-primitives=no but performance will be very
poor.  This override should only be specified for correctness
testing purposes."  I am afraid that I won't accept the performance to be
very poor.

If I don't set this option, the configuration fails again.
I attached the stderr message file screen nemesis.txt, the screen output
file nemesis.txt and the config.log. Please check.

If I set the --with-device=ch3:shm, there is also error from checking for
x86 mfence instruction using __asm__. I can provide the files including the
output information like the above if needed.

Thank you!

2009/11/11 <chan at mcs.anl.gov>

>
> ----- "junli gu" <gujunli at gmail.com> wrote:
>
>
> >   "export
> >
> DRIVER_PATH=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu/
> >   export GCC=${DRIVER_PATH}/bin/alpha-gcc
> >   export CC=${DRIVER_PATH}/bin/alpha-gcc
> >   export CXX=${DRIVER_PATH}/bin/g++
> >   export AR=${DRIVER_PATH}/bin/ar
> >   export LD=${DRIVER_PATH}/bin/ld
> >   ./configure --prefix=/home/junligu/shared/MPICH_alpha2 --enable-cxx
> > --disable-f77 --with-device=ch3:nemesis --with-atomic-primitives=no
> > --target=alpha-unknown-linux-gnu --host=i386-unknown-linux-gnu  "
> >
>
> It seems you might have specified --host incorrectly, replace
> your --host and --target options by the followings:
>
> --build=i386-unknown-linux-gnu --host=alpha-unknown-linux-gnu
>
> (see
>
> http://www.gnu.org/software/autoconf/manual/autoconf.html#Specifying-Target-Triplets
> )
>
> Be sure to do a "make distclean" before reconfiguring mpich2.
> If the problem persists, send us the configure and make outputs
> as seen on your terminal (It is possible that cross-compile support
> is still buggy)
>
> BTW, your stderr message should be piped to the configure output
> file as it will help us to identify any potential problem/bug faster.
> If you are not familiar with piping stderr and stdout to 1 file,
> see the mpich2's README or installer's guide.
>
> A.Chan
> _______________________________________________
> mpich-discuss mailing list
> mpich-discuss at mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>

-- 
************************************************
Gu Junli--谷俊丽
PHD Candidate of Tsinghua University
Beijing 100084,China
Tel: 86-10-62795139

************************************************
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Configuring MPICH2 version 1.2 with  '--prefix=/home/junligu/shared/MPICH_alpha2' '--enable-cxx' '--disable-f77' '--disable-romio' '--with-device=ch3:nemesis' '--host=alpha-unknown-linux-gnu' '--build=i386-unknown-linux-gnu' 'build_alias=i386-unknown-linux-gnu' 'host_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++'
Running on system: Linux hastur 2.6.28-15-generic #52-Ubuntu SMP Wed Sep 9 10:49:34 UTC 2009 i686 GNU/Linux
Executing mpich2prereq in /home/junligu/shared/mpich2-1.2/src/mpid/ch3 with nemesis
Executing mpich2prereq in /home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis
sourcing /home/junligu/shared/mpich2-1.2/src/pm/mpd/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/hydra/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/gforker/mpich2prereq
sourcing /home/junligu/shared/mpich2-1.2/src/pm/mpd/setup_pm
checking for alpha-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... 
checking whether the compiler sets __FUNCTION__... 
checking whether C compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute ((weak_import)) allowed... yes
checking for multiple weak symbol support... yes
checking whether we are using the GNU C++ compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ accepts -g... yes
checking whether the C++ compiler /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/ar
checking for ranlib... ranlib
checking for killall... killall
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for alpha-unknown-linux-gnu-ranlib... (cached) ranlib
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... no
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for volatile... yes
checking for restrict... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... unknown
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... 
checking for max C struct floating point alignment... 
checking for max C struct alignment of structs with doubles... 
checking for max C struct floating point alignment with long doubles... 
checking if alignment of structs with doubles is based on position... 
checking if alignment of structs with long long ints is based on position... 
checking if double alignment breaks rules, find actual alignment... 
checking for alignment restrictions on pointers... pointer
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 8
checking size of void *... 8
checking for ANSI C header files... no
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 16
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 16
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking size of bool... 1
checking how to run the C++ preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 16
checking if char * pointers use byte addresses... 
checking for alignment restrictions on ... unknown
checking for alignment restrictions on int32_t... unknown
checking size of MPIR_Bsend_data_t... 88
checking for gcc __asm__ and pentium cmpxchgl instruction... not checking when cross compiling
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... not checking when cross compiling
checking for gcc __asm__ and IA64 xchg4 instruction... not checking when cross compiling
checking for ANSI C header files... (cached) no
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking string.h usability... yes
checking string.h presence... yes
checking for string.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for gettimeofday... yes
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
sourcing /home/junligu/shared/mpich2-1.2/src/mpid/common/locks/setup
RUNNING SETUP FOR THE PROCESS LOCKS MODULE
SPARC V9 inline spin locks supported...no
SPARC V8 inline spin locks supported...no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for fgrep... /bin/fgrep
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... no
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
configure: configuring subsystem in src/openpa
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for alpha-unknown-linux-gnu-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for alpha-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc... gcc3
checking for alpha-unknown-linux-gnu-ranlib... ranlib
checking whether to enable assertions... yes
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... N/A
checking size of void *... 8
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86 bit primitives for pre-Pentium 4... no
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... no
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
config.status: executing depfiles commands
configure: configuring subsystem in src/mpid/ch3
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
16
checking for alpha-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... no
checking uuid/uuid.h presence... no
checking for uuid/uuid.h... no
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking for library containing uuid_generate... no
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of void *... 8
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/shm/Makefile
config.status: creating util/shmbase/Makefile
config.status: creating channels/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: include/mpidi_ch3_conf.h is unchanged
config.status: executing default-1 commands
copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
=== configuring in channels/nemesis (/home/junligu/shared/mpich2-1.2/src/mpid/ch3/channels/nemesis)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/junligu/shared/MPICH_alpha2'  '--enable-cxx' '--disable-f77' '--disable-romio' '--with-device=ch3:nemesis' '--host=alpha-unknown-linux-gnu' '--build=i386-unknown-linux-gnu' 'build_alias=i386-unknown-linux-gnu' 'host_alias=alpha-unknown-linux-gnu' 'CC=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc' 'CXX=/opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/g++' '--with-atomic-primitives=auto_allow_emulation' 'CFLAGS= -O2' 'LIBS= -lpthread' 'CPPFLAGS= -I/home/junligu/shared/mpich2-1.2/src/openpa/src -I/home/junligu/shared/mpich2-1.2/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for alpha-unknown-linux-gnu-gcc... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc accepts -g... yes
checking for /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... /opt/crosstool/gcc-3.4.3-glibc-2.3.5/alpha-unknown-linux-gnu/alpha-unknown-linux-gnu//bin/alpha-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... no
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./configure: line 1: ?#!: command not found
configure: WARNING: unrecognized options: --enable-cxx, --disable-f77, --disable-romio, --with-device
configure: WARNING: using cross tools not prefixed with host triplet
configure: WARNING:
===================================================
Using locks to implement atomic primitives.  This
will result in a substantial impact on performance.
Use this only for testing.
===================================================
configure: WARNING: unrecognized options: --enable-cxx, --disable-f77, --disable-romio, --with-device
configure: error:
The nemesis channel was selected yet no native atomic primitives are
available on this platform.  OpenPA can emulate atomic primitives using
locks by specifying --with-atomic-primitives=no but performance will be
very poor.  This override should only be specified for correctness
testing purposes.
configure: error: ./configure failed for channels/nemesis
configure: error: Configure of src/mpid/ch3 failed!
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